Detailed information NTG1131070

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: H0514_RS00920
• Genome accession: NZ_LR822020
• Coordinates: 159531..159923 (+)
• Length: 130 a.a.
• NCBI ID: WP_179972332.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_956
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 154531..164923

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0514_RS00885 (STHERMO_0179)	proC	154734..155504 (-)	771	WP_179972337.1	pyrroline-5-carboxylate reductase	-
H0514_RS00890 (STHERMO_0180)	pepA	155520..156587 (-)	1068	WP_179972336.1	glutamyl aminopeptidase	-
H0514_RS00895 (STHERMO_0181)	-	156687..156971 (+)	285	WP_002952020.1	DUF4651 domain-containing protein	-
H0514_RS00900 (STHERMO_0182)	-	156968..157282 (+)	315	WP_002945230.1	thioredoxin family protein	-
H0514_RS00905 (STHERMO_0183)	ytpR	157292..157915 (+)	624	WP_179972335.1	YtpR family tRNA-binding protein	-
H0514_RS00910 (STHERMO_0184)	-	158053..159084 (+)	1032	WP_179972334.1	YeeE/YedE family protein	-
H0514_RS00915 (STHERMO_0185)	-	159099..159326 (+)	228	WP_179972333.1	sulfurtransferase TusA family protein	-
H0514_RS00920 (STHERMO_0186)	ssbA	159531..159923 (+)	393	WP_179972332.1	single-stranded DNA-binding protein	Machinery gene
H0514_RS00925 (STHERMO_0188)	tadA	160683..161201 (+)	519	WP_179972331.1	tRNA adenosine(34) deaminase TadA	-
H0514_RS11105 (STHERMO_0189)	-	161282..161545 (-)	264	WP_332057735.1	hypothetical protein	-
H0514_RS00930 (STHERMO_0190)	-	161598..161765 (-)	168	WP_179972330.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
H0514_RS00940 (STHERMO_0191)	-	162134..162967 (+)	834	WP_179972329.1	putative RNA methyltransferase	-
H0514_RS00945	-	163082..163836 (+)	755	Protein_143	HAD family hydrolase	-
H0514_RS00950 (STHERMO_0194)	dapD	163922..164620 (+)	699	WP_084829131.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14745.68 Da
• Isoelectric Point: 5.9275

>NTDB_id=1131070 H0514_RS00920 WP_179972332.1 159531..159923(+) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_956]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVKENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=1131070 H0514_RS00920 WP_179972332.1 159531..159923(+) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_956]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGATAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTAGTTT
GGGGGCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTTCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAAGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAACTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	78.626	100	0.792
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.046	100	0.746
ssbB/cilA	Streptococcus mitis SK321	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae R6	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae Rx1	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae D39	73.282	100	0.738
ssbB/cilA	Streptococcus mitis NCTC 12261	71.756	100	0.723
ssbB	Lactococcus lactis subsp. cremoris KW2	61.607	86.154	0.531
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377