Detailed information NTG1131046

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: H0510_RS08405
• Genome accession: NZ_LR822019
• Coordinates: 1623502..1623894 (-)
• Length: 130 a.a.
• NCBI ID: WP_096811677.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus isolate STH_CIRM_772
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1621546..1622802	1623502..1623894	flank	700

Gene organization within MGE regions

Location: 1621546..1623894

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H0510_RS08400 (STHERMO_1871)	-	1621546..1622795 (+)	1250	Protein_1616	ISL3 family transposase	-
H0510_RS08405 (STHERMO_1873)	ssbA	1623502..1623894 (-)	393	WP_096811677.1	single-stranded DNA-binding protein	Machinery gene

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14807.71 Da
• Isoelectric Point: 5.9275

>NTDB_id=1131046 H0510_RS08405 WP_096811677.1 1623502..1623894(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_772]
MYNKVILIGRLTATPEMVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEEFPF

Nucleotide

• Length: 393 bp

>NTDB_id=1131046 H0510_RS08405 WP_096811677.1 1623502..1623894(-) (ssbA) [Streptococcus thermophilus isolate STH_CIRM_772]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATGGTTAAGACTGCTAGTGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGATTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACATTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAGTTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	78.626	100	0.792
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.046	100	0.746
ssbB/cilA	Streptococcus mitis SK321	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae R6	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae Rx1	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae D39	73.282	100	0.738
ssbB/cilA	Streptococcus mitis NCTC 12261	71.756	100	0.723
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377