Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   L1Z78_RS05725 Genome accession   NZ_LR813084
Coordinates   1271622..1272839 (-) Length   405 a.a.
NCBI ID   WP_234640592.1    Uniprot ID   -
Organism   Delftia tsuruhatensis isolate BB1455     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1266622..1277839
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1Z78_RS05695 (TML_01137) - 1267499..1268455 (+) 957 WP_234640586.1 ATP-binding protein -
  L1Z78_RS05700 (TML_01138) - 1268509..1269000 (+) 492 WP_234640587.1 NUDIX domain-containing protein -
  L1Z78_RS05705 (TML_01139) - 1269001..1269225 (-) 225 WP_234640588.1 DNA gyrase inhibitor YacG -
  L1Z78_RS05710 (TML_01140) zapD 1269243..1269998 (-) 756 WP_234640589.1 cell division protein ZapD -
  L1Z78_RS05715 (TML_01141) coaE 1270088..1270726 (-) 639 WP_234640590.1 dephospho-CoA kinase -
  L1Z78_RS05720 (TML_01142) pilD 1270741..1271622 (-) 882 WP_234640591.1 prepilin peptidase Machinery gene
  L1Z78_RS05725 (TML_01143) pilC 1271622..1272839 (-) 1218 WP_234640592.1 type II secretion system F family protein Machinery gene
  L1Z78_RS05730 (TML_01144) pilB 1272878..1274620 (-) 1743 WP_234640593.1 type IV-A pilus assembly ATPase PilB Machinery gene
  L1Z78_RS05740 (TML_01146) - 1274869..1275798 (-) 930 WP_234642099.1 polyprenyl synthetase family protein -
  L1Z78_RS05745 (TML_01147) rplU 1276030..1276341 (+) 312 WP_012207284.1 50S ribosomal protein L21 -
  L1Z78_RS05750 (TML_01148) rpmA 1276357..1276614 (+) 258 WP_012207283.1 50S ribosomal protein L27 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44336.14 Da        Isoelectric Point: 9.3857

>NTDB_id=1130381 L1Z78_RS05725 WP_234640592.1 1271622..1272839(-) (pilC) [Delftia tsuruhatensis isolate BB1455]
MATAASKGIKEFVFEWEGKDRNGKIVRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKKIKPKDIALFTRQMATMMK
AGVPLLQAFDIVGRGNTNASVTRLLADIRADVETGTSLNAAYRKHPMYFDSLYCNLVEAGEAAGILEALLDRLATYMEKT
EAIKSKIKSALMYPISVVVVAFVVVTIIMIFVIPAFKEVFSSFGADLPAPTLFVMGISDVFVQWWWVIFGVLGGGLYFFM
QAWKRNERMQQFMDRTLLKVPIFGVLIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAVYANATEKIQQEVSTGT
SLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFK
LGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1130381 L1Z78_RS05725 WP_234640592.1 1271622..1272839(-) (pilC) [Delftia tsuruhatensis isolate BB1455]
ATGGCCACAGCAGCGTCCAAGGGCATCAAGGAATTCGTCTTCGAATGGGAGGGCAAGGACCGCAACGGCAAGATCGTCCG
CGGCGAGACCCGGGCCGGCGGCATCAACCAGGTCCAGGCCATGCTGCGCCGCCAGGGCGTGCTTCCCAGCAAGATCAAGA
AGCGCCGCACCCGCGGCGGCAAGAAGATCAAGCCCAAGGACATCGCGCTGTTCACGCGCCAGATGGCCACGATGATGAAG
GCCGGTGTCCCGTTGCTGCAGGCCTTCGACATCGTGGGACGCGGCAACACCAATGCCAGCGTGACGCGCCTGCTGGCCGA
CATCCGCGCCGACGTGGAGACCGGCACCTCGCTGAATGCGGCCTATCGCAAGCACCCCATGTACTTCGACAGCCTCTATT
GCAATCTGGTGGAGGCCGGGGAAGCCGCCGGTATCCTGGAAGCGTTGCTCGATCGCCTGGCCACCTACATGGAGAAGACC
GAGGCCATCAAGTCCAAGATCAAGTCGGCGCTGATGTACCCGATCTCCGTGGTCGTCGTGGCCTTTGTCGTCGTGACCAT
CATCATGATCTTCGTGATCCCGGCCTTCAAGGAAGTATTCAGCTCGTTCGGCGCCGATCTTCCCGCCCCCACGCTGTTCG
TGATGGGCATCAGCGACGTCTTCGTGCAGTGGTGGTGGGTGATCTTCGGCGTATTGGGCGGCGGCCTCTACTTCTTCATG
CAGGCCTGGAAGCGCAACGAGCGCATGCAGCAGTTCATGGACCGCACACTGCTCAAGGTCCCGATCTTCGGCGTGCTGAT
CGAGAAATCCTGCGTGGCGCGCTGGACGCGTACCCTGTCGACCATGTTCGCCGCAGGTGTCCCGCTGGTCGAGGCGCTGG
ACTCCGTGGGGGGTGCATCCGGCAACGCCGTCTACGCCAACGCCACGGAGAAGATCCAGCAGGAGGTGTCCACGGGCACC
AGCCTGACCGTGGCCATGACCAATGCCAACGTCTTTCCCTCGATGGTGCTGCAGATGTGCGCCATCGGGGAGGAGTCGGG
TTCCATCGACCACATGCTGGGCAAGGCCGCGGACTTCTACGAAGAAGAGGTCGATGACATGGTCGCAGGCCTTTCCAGCC
TGATGGAGCCCATCATCATCGTCTTCCTGGGCACTCTCATCGGCGGCATCGTGGTGTCCATGTACCTGCCCATCTTCAAG
CTGGGACAGGTGGTCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.95

99.753

0.548
  pilG Neisseria gonorrhoeae MS11

50.75

98.765

0.501
  pilG Neisseria meningitidis 44/76-A

50.5

98.765

0.499
  pilC Legionella pneumophila strain ERS1305867

50.505

97.778

0.494
  pilC Acinetobacter baylyi ADP1

48.995

98.272

0.481
  pilC Acinetobacter baumannii D1279779

47.607

98.025

0.467
  pilC Vibrio cholerae strain A1552

40.806

98.025

0.4
  pilC Vibrio campbellii strain DS40M4

39.547

98.025

0.388
  pilC Thermus thermophilus HB27

36.881

99.753

0.368

Multiple sequence alignment