Detailed information NTG1130380

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: L1Z78_RS05720
• Genome accession: NZ_LR813084
• Coordinates: 1270741..1271622 (-)
• Length: 293 a.a.
• NCBI ID: WP_234640591.1
• Uniprot ID: -
• Organism: Delftia tsuruhatensis isolate BB1455
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1265741..1276622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1Z78_RS05690 (TML_01136)	argJ	1266100..1267332 (+)	1233	WP_234640585.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
L1Z78_RS05695 (TML_01137)	-	1267499..1268455 (+)	957	WP_234640586.1	ATP-binding protein	-
L1Z78_RS05700 (TML_01138)	-	1268509..1269000 (+)	492	WP_234640587.1	NUDIX domain-containing protein	-
L1Z78_RS05705 (TML_01139)	-	1269001..1269225 (-)	225	WP_234640588.1	DNA gyrase inhibitor YacG	-
L1Z78_RS05710 (TML_01140)	zapD	1269243..1269998 (-)	756	WP_234640589.1	cell division protein ZapD	-
L1Z78_RS05715 (TML_01141)	coaE	1270088..1270726 (-)	639	WP_234640590.1	dephospho-CoA kinase	-
L1Z78_RS05720 (TML_01142)	pilD	1270741..1271622 (-)	882	WP_234640591.1	prepilin peptidase	Machinery gene
L1Z78_RS05725 (TML_01143)	pilC	1271622..1272839 (-)	1218	WP_234640592.1	type II secretion system F family protein	Machinery gene
L1Z78_RS05730 (TML_01144)	pilB	1272878..1274620 (-)	1743	WP_234640593.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L1Z78_RS05740 (TML_01146)	-	1274869..1275798 (-)	930	WP_234642099.1	polyprenyl synthetase family protein	-
L1Z78_RS05745 (TML_01147)	rplU	1276030..1276341 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
L1Z78_RS05750 (TML_01148)	rpmA	1276357..1276614 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31621.24 Da
• Isoelectric Point: 7.5683

>NTDB_id=1130380 L1Z78_RS05720 WP_234640591.1 1270741..1271622(-) (pilD) [Delftia tsuruhatensis isolate BB1455]
MLLDPWMQAALGGLFGLMVGSFLNVVVHRMPRMMEQDWDAECARWVQERSGGVPSLPSTPAEPALSLSRPRSRCPHCGHA
IAWHENIPVFSYLALRGRCSQCKTPIGVRYPLVELTCAALFAFCIARWGISPTGAAWCLFSAALLSLALIDWDTTLLPDD
ITLPLLWGGLLASALHWTTVPVADAIWGAAGGYLSLWLVYWGFKLVTGKEGMGYGDFKLFAALGAWFGWQALIPIILVSS
VIGAVVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLSALGL

Nucleotide

• Length: 882 bp

>NTDB_id=1130380 L1Z78_RS05720 WP_234640591.1 1270741..1271622(-) (pilD) [Delftia tsuruhatensis isolate BB1455]
ATGCTTCTGGATCCCTGGATGCAGGCCGCGCTGGGCGGCCTGTTCGGCCTGATGGTCGGCAGCTTTCTCAATGTGGTGGT
GCACCGCATGCCGCGCATGATGGAGCAGGATTGGGATGCGGAGTGTGCCCGATGGGTGCAGGAGCGCTCCGGCGGCGTAC
CGTCCCTGCCATCCACCCCGGCCGAGCCCGCGTTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCCCATTGCGGCCATGCG
ATCGCCTGGCACGAGAACATTCCCGTGTTCAGCTACCTGGCGCTGCGGGGCCGTTGCTCGCAATGCAAGACACCCATCGG
CGTGCGCTATCCACTGGTGGAGCTGACCTGTGCCGCGCTGTTTGCCTTCTGCATCGCGCGATGGGGCATCAGCCCGACCG
GCGCGGCGTGGTGTCTGTTCAGTGCCGCCTTGCTGAGCCTGGCGTTGATCGACTGGGATACCACGCTGCTGCCCGATGAC
ATCACCCTGCCCCTGCTATGGGGCGGACTGCTGGCATCGGCGCTGCACTGGACGACCGTACCCGTGGCCGATGCCATCTG
GGGCGCGGCTGGCGGCTATCTGTCGCTGTGGCTGGTCTACTGGGGCTTCAAGCTGGTCACCGGCAAGGAAGGCATGGGAT
ATGGCGACTTCAAGCTGTTTGCCGCGCTCGGCGCGTGGTTCGGCTGGCAGGCCCTCATTCCCATCATCCTGGTCTCTTCG
GTGATCGGTGCCGTCGTGGGCATCGCGCTGAAGATCAACAGCCGCCTGCGGGAAGGCGGTTATGTACCCTTCGGCCCCTT
CCTCGCCGGTGCAGGTTTTGCCGCCATGGTGTTCGGTCCCCAGCAGATGCTGCAATCCCTGCTGTCGGCACTCGGACTTT
GA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (139-248)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.357	95.563	0.481
pilD	Vibrio campbellii strain DS40M4	46.897	98.976	0.464
pilD	Acinetobacter nosocomialis M2	45.221	92.833	0.42
pilD	Acinetobacter baumannii D1279779	44.853	92.833	0.416
pilD	Neisseria gonorrhoeae MS11	44.867	89.761	0.403