Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GPW69_RS00830 Genome accession   NZ_LR738724
Coordinates   126536..126931 (+) Length   131 a.a.
NCBI ID   WP_074391339.1    Uniprot ID   A0AAW5LN42
Organism   Streptococcus suis isolate 9401240     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121536..131931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW69_RS00800 pepA 122141..123202 (-) 1062 WP_074391334.1 glutamyl aminopeptidase -
  GPW69_RS00805 - 123415..123699 (+) 285 WP_024383185.1 DUF4651 domain-containing protein -
  GPW69_RS00810 - 123696..124016 (+) 321 WP_074391335.1 thioredoxin family protein -
  GPW69_RS00815 - 124060..125016 (+) 957 WP_074391336.1 DUF1002 domain-containing protein -
  GPW69_RS00820 ytpR 125035..125658 (+) 624 WP_074391337.1 YtpR family tRNA-binding protein -
  GPW69_RS00825 - 125691..126470 (-) 780 WP_074391338.1 DUF2785 domain-containing protein -
  GPW69_RS00830 ssbA 126536..126931 (+) 396 WP_074391339.1 single-stranded DNA-binding protein Machinery gene
  GPW69_RS00835 - 127045..127290 (-) 246 WP_074391340.1 hypothetical protein -
  GPW69_RS00840 groES 127488..127769 (+) 282 WP_074391341.1 co-chaperone GroES -
  GPW69_RS00845 groL 127780..129402 (+) 1623 WP_024393522.1 chaperonin GroEL -
  GPW69_RS00850 rpsL 129633..130046 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  GPW69_RS00855 rpsG 130063..130533 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14865.73 Da        Isoelectric Point: 5.0026

>NTDB_id=1129587 GPW69_RS00830 WP_074391339.1 126536..126931(+) (ssbA) [Streptococcus suis isolate 9401240]
MYNKIIAIGRLTAQPELTQTPNGKNLTRVTIAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGNTFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1129587 GPW69_RS00830 WP_074391339.1 126536..126931(+) (ssbA) [Streptococcus suis isolate 9401240]
ATGTATAATAAAATCATTGCAATCGGTCGCTTGACGGCCCAACCGGAACTGACTCAAACGCCAAATGGCAAAAATCTGAC
TCGTGTTACAATTGCTGTGAATCGCCGTTTCAAAACAGAAAATGGCGAGCGTGAGGCAGACTTTTTGAATGTTATTTTCT
GGGGAAAACTGGCGGAAACACTTGTCTCTTATGGTAGTAAAGGAAGTTTAATTTCTATTGATGGTGAGTTGCGGACGCGA
AAATACGAAAAAGATGGCAGCAACCACTATGTGACCGAAATCTTGGGCAATACCTTCCAGTTGCTCGAAAGCCGCGCCCA
ACGTGCCATGCGAGAAAATAATACTGGCGATGACCTAGCTGACTTGGTCTTGGAAGAGGAAGAATTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

71.756

100

0.718
  ssbB Lactococcus lactis subsp. cremoris KW2

62.5

85.496

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

43.363

86.26

0.374
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.283

80.916

0.366

Multiple sequence alignment