Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FQT67_RS00815 Genome accession   NZ_LR595857
Coordinates   132673..133068 (+) Length   131 a.a.
NCBI ID   WP_046177419.1    Uniprot ID   -
Organism   Streptococcus sp. NCTC 11567 strain NCTC11567     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 127673..138068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FQT67_RS00780 (NCTC11567_00161) - 128256..128693 (+) 438 WP_012766452.1 hypothetical protein -
  FQT67_RS00785 (NCTC11567_00162) proC 128832..129608 (-) 777 WP_046177417.1 pyrroline-5-carboxylate reductase -
  FQT67_RS00790 (NCTC11567_00163) pepA 129655..130722 (-) 1068 WP_046166119.1 glutamyl aminopeptidase -
  FQT67_RS00800 (NCTC11567_00164) - 131280..131564 (+) 285 WP_003055815.1 DUF4651 domain-containing protein -
  FQT67_RS00805 (NCTC11567_00165) - 131561..131878 (+) 318 WP_003055817.1 thioredoxin family protein -
  FQT67_RS00810 (NCTC11567_00166) ytpR 131896..132522 (+) 627 WP_046177418.1 YtpR family tRNA-binding protein -
  FQT67_RS00815 (NCTC11567_00167) ssbA 132673..133068 (+) 396 WP_046177419.1 single-stranded DNA-binding protein Machinery gene
  FQT67_RS00820 (NCTC11567_00168) - 133328..133969 (-) 642 WP_046177420.1 deoxynucleoside kinase -
  FQT67_RS00825 (NCTC11567_00169) dusB 133989..134966 (-) 978 WP_002986502.1 tRNA dihydrouridine synthase DusB -
  FQT67_RS00830 (NCTC11567_00170) hslO 134953..135825 (-) 873 WP_003060359.1 Hsp33 family molecular chaperone HslO -
  FQT67_RS00835 (NCTC11567_00171) rofA 135972..137465 (-) 1494 WP_046177421.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14786.97 Da        Isoelectric Point: 8.8846

>NTDB_id=1128407 FQT67_RS00815 WP_046177419.1 132673..133068(+) (ssbA) [Streptococcus sp. NCTC 11567 strain NCTC11567]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYNKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1128407 FQT67_RS00815 WP_046177419.1 132673..133068(+) (ssbA) [Streptococcus sp. NCTC 11567 strain NCTC11567]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTGGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACTCGC
AAGTATAATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssb Latilactobacillus sakei subsp. sakei 23K

47.788

86.26

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405

Multiple sequence alignment