Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGL21_RS00940 Genome accession   NZ_LR594047
Coordinates   148023..148418 (+) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 143023..153418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL21_RS00905 (NCTC11554_00185) - 143604..144041 (+) 438 WP_012766452.1 hypothetical protein -
  FGL21_RS00910 (NCTC11554_00186) proC 144180..144956 (-) 777 WP_014611934.1 pyrroline-5-carboxylate reductase -
  FGL21_RS00915 (NCTC11554_00187) pepA 145003..146070 (-) 1068 WP_012766453.1 glutamyl aminopeptidase -
  FGL21_RS00925 (NCTC11554_00188) - 146629..146913 (+) 285 WP_014611936.1 DUF4651 domain-containing protein -
  FGL21_RS00930 (NCTC11554_00189) - 146910..147227 (+) 318 WP_003055817.1 thioredoxin family protein -
  FGL21_RS00935 (NCTC11554_00190) ytpR 147245..147871 (+) 627 WP_003062450.1 YtpR family tRNA-binding protein -
  FGL21_RS00940 (NCTC11554_00191) ssbA 148023..148418 (+) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  FGL21_RS00945 (NCTC11554_00192) - 148678..149319 (-) 642 WP_014611937.1 deoxynucleoside kinase -
  FGL21_RS00950 (NCTC11554_00193) dusB 149339..150316 (-) 978 WP_014611938.1 tRNA dihydrouridine synthase DusB -
  FGL21_RS00955 (NCTC11554_00194) hslO 150303..151175 (-) 873 WP_014611939.1 Hsp33 family molecular chaperone HslO -
  FGL21_RS00960 (NCTC11554_00195) rofA 151322..152815 (-) 1494 WP_014611940.1 transcriptional regulator RofA -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=1127837 FGL21_RS00940 WP_003053955.1 148023..148418(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1127837 FGL21_RS00940 WP_003053955.1 148023..148418(+) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC11554]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCTGATTTTATTTCAGTTGTTGTTT
GGGGAAAGTTAGCAGAAACTCTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGCGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment