Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   FGL16_RS00940 Genome accession   NZ_LR594043
Coordinates   144165..144560 (+) Length   131 a.a.
NCBI ID   WP_014735302.1    Uniprot ID   -
Organism   Streptococcus suis strain NCTC10237     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 139165..149560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL16_RS00905 (NCTC10237_00177) pepA 139195..140256 (-) 1062 WP_014735296.1 glutamyl aminopeptidase -
  FGL16_RS00915 (NCTC10237_00178) - 141054..141329 (+) 276 WP_014735297.1 DUF4651 domain-containing protein -
  FGL16_RS00920 (NCTC10237_00179) - 141335..141655 (+) 321 WP_014735298.1 thioredoxin family protein -
  FGL16_RS00925 (NCTC10237_00180) - 141700..142656 (+) 957 WP_014735299.1 DUF1002 domain-containing protein -
  FGL16_RS00930 (NCTC10237_00181) ytpR 142675..143298 (+) 624 WP_014735300.1 YtpR family tRNA-binding protein -
  FGL16_RS00935 (NCTC10237_00182) - 143331..144110 (-) 780 WP_014735301.1 DUF2785 domain-containing protein -
  FGL16_RS00940 (NCTC10237_00183) ssbB 144165..144560 (+) 396 WP_014735302.1 single-stranded DNA-binding protein Machinery gene
  FGL16_RS10895 (NCTC10237_00184) - 144980..145138 (-) 159 WP_014735303.1 hypothetical protein -
  FGL16_RS00955 (NCTC10237_00185) groES 145335..145616 (+) 282 WP_014735304.1 co-chaperone GroES -
  FGL16_RS00960 (NCTC10237_00186) groL 145627..147249 (+) 1623 WP_014735305.1 chaperonin GroEL -
  FGL16_RS00965 (NCTC10237_00187) rpsL 147481..147894 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  FGL16_RS00970 (NCTC10237_00188) rpsG 147911..148381 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14881.73 Da        Isoelectric Point: 5.0026

>NTDB_id=1127617 FGL16_RS00940 WP_014735302.1 144165..144560(+) (ssbB) [Streptococcus suis strain NCTC10237]
MYNKVIAIGRLTAQPELTQTPNGKNLTRITVAVNRRFKTENGEREADFLNVIFWSKLAETLVSYGSKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1127617 FGL16_RS00940 WP_014735302.1 144165..144560(+) (ssbB) [Streptococcus suis strain NCTC10237]
ATGTATAATAAAGTTATTGCAATCGGTCGCTTGACGGCCCAACCCGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTATTACTGTCGCAGTCAATCGCCGATTTAAGACTGAAAATGGTGAGCGTGAAGCAGATTTTCTTAATGTTATTTTCT
GGAGCAAACTGGCGGAAACACTTGTCTCCTATGGTAGCAAGGGTAGTCTGATTTCTATTGATGGTGAGTTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAGATTTTGGGCCAATCTTTCCAATTACTAGAAAGCCGTGCCCA
ACGTGCCATGCGTGAAAACAATACTGGTGATGACCTAGCAGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

61.607

85.496

0.527
  ssb Latilactobacillus sakei subsp. sakei 23K

44.248

86.26

0.382
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.17

80.916

0.382

Multiple sequence alignment