Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   FGL04_RS08945 Genome accession   NZ_LR594035
Coordinates   1730172..1730684 (-) Length   170 a.a.
NCBI ID   WP_225247822.1    Uniprot ID   A0A4U9ZGB8
Organism   Streptococcus pseudoporcinus strain NCTC5385     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1725172..1735684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGL04_RS08910 (NCTC5385_01937) rsfS 1725890..1726243 (-) 354 WP_138068936.1 ribosome silencing factor -
  FGL04_RS08920 (NCTC5385_01939) yqeK 1726767..1727360 (-) 594 WP_138068937.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  FGL04_RS08925 (NCTC5385_01940) - 1727357..1727989 (-) 633 WP_007894856.1 nicotinate-nucleotide adenylyltransferase -
  FGL04_RS08930 (NCTC5385_01941) yhbY 1728057..1728365 (-) 309 WP_007894857.1 ribosome assembly RNA-binding protein YhbY -
  FGL04_RS08935 (NCTC5385_01942) yqeH 1728425..1729540 (-) 1116 WP_138068938.1 ribosome biogenesis GTPase YqeH -
  FGL04_RS08940 (NCTC5385_01943) - 1729540..1730067 (-) 528 WP_138069179.1 YqeG family HAD IIIA-type phosphatase -
  FGL04_RS08945 (NCTC5385_01944) comX/sigX/comX2/sigX2 1730172..1730684 (-) 513 WP_225247822.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 20477.09 Da        Isoelectric Point: 10.2211

>NTDB_id=1127318 FGL04_RS08945 WP_225247822.1 1730172..1730684(-) (comX/sigX/comX2/sigX2) [Streptococcus pseudoporcinus strain NCTC5385]
MTIILKEGVIKKPMYELNQLFSQVKPIVFKLMRTYFIQLWETDDWLQEGRLVLYSLIESNPELLTNQKKLLVYFKTKFSS
HIKDTIRHQESFKRKLNRLPYQEISEVSHRIPEKGLILDDFVAYQSIIEELKPYLTMKEQNQFKALLRGERFSGRKSLLR
KLKPFFIDFQ

Nucleotide


Download         Length: 513 bp        

>NTDB_id=1127318 FGL04_RS08945 WP_225247822.1 1730172..1730684(-) (comX/sigX/comX2/sigX2) [Streptococcus pseudoporcinus strain NCTC5385]
ATGACTATCATTTTGAAAGAAGGTGTTATTAAAAAGCCTATGTATGAATTAAATCAACTATTTAGCCAAGTAAAGCCAAT
TGTTTTTAAGCTAATGCGGACCTATTTTATTCAATTATGGGAAACTGATGATTGGCTACAAGAAGGACGTTTAGTTCTAT
ATAGTCTGATCGAAAGTAATCCTGAATTACTAACTAATCAAAAAAAGTTACTGGTATATTTTAAAACTAAATTTTCGTCC
CATATAAAAGACACTATTCGTCATCAAGAATCTTTCAAACGAAAATTAAATCGCTTACCATATCAAGAAATTAGTGAAGT
TTCTCATCGGATACCGGAAAAGGGACTCATCCTTGATGATTTTGTTGCTTATCAGTCAATTATTGAGGAATTGAAGCCAT
ATTTGACCATGAAAGAACAAAATCAGTTTAAAGCATTGCTAAGAGGAGAGCGCTTTTCTGGGCGAAAATCTTTATTGCGC
AAGTTGAAGCCTTTCTTTATAGACTTTCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U9ZGB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.