Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   FGK99_RS09370 Genome accession   NZ_LR594033
Coordinates   1966590..1966985 (-) Length   131 a.a.
NCBI ID   WP_043053489.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain NCTC4675     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1961590..1971985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FGK99_RS09350 (NCTC4675_01900) - 1962378..1963181 (-) 804 WP_138119878.1 ABC transporter ATP-binding protein -
  FGK99_RS09355 (NCTC4675_01901) - 1963190..1964074 (-) 885 WP_138119880.1 ABC transporter permease -
  FGK99_RS09360 (NCTC4675_01902) - 1964189..1965151 (-) 963 WP_043041201.1 ABC transporter substrate-binding protein -
  FGK99_RS09365 (NCTC4675_01903) - 1965178..1966143 (-) 966 WP_138119882.1 ABC transporter substrate-binding protein -
  FGK99_RS09370 (NCTC4675_01904) ssbA 1966590..1966985 (-) 396 WP_043053489.1 single-stranded DNA-binding protein Machinery gene
  FGK99_RS09380 (NCTC4675_01905) ytpR 1967567..1968193 (-) 627 WP_138119884.1 YtpR family tRNA-binding protein -
  FGK99_RS09385 (NCTC4675_01906) - 1968208..1968525 (-) 318 WP_012678673.1 thioredoxin family protein -
  FGK99_RS09390 (NCTC4675_01907) - 1968522..1968806 (-) 285 WP_231147316.1 DUF4651 domain-containing protein -
  FGK99_RS09395 (NCTC4675_01908) pepA 1969201..1970268 (+) 1068 WP_138119888.1 glutamyl aminopeptidase -
  FGK99_RS09400 (NCTC4675_01909) proC 1970352..1971125 (+) 774 WP_043031581.1 pyrroline-5-carboxylate reductase -
  FGK99_RS09405 (NCTC4675_01910) - 1971360..1971797 (-) 438 WP_138119890.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14769.91 Da        Isoelectric Point: 8.0250

>NTDB_id=1127207 FGK99_RS09370 WP_043053489.1 1966590..1966985(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
MYNKVILIGRLVAKPELTKTLTDKQVVRFTLAVNRRFKTTTGEREVDFINVVAWGGLAETLASYASKGSLLSLDGELRTR
KYDKAGQTHFVTEVLCHSFQLLESRAQRAIRENNAANDLIDLALEEENLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1127207 FGK99_RS09370 WP_043053489.1 1966590..1966985(-) (ssbA) [Streptococcus equi subsp. zooepidemicus strain NCTC4675]
ATGTACAATAAAGTAATCTTGATAGGCCGTTTAGTGGCCAAGCCAGAATTAACCAAGACATTAACGGATAAGCAGGTCGT
TCGATTTACCTTAGCAGTTAATCGTCGGTTTAAGACGACGACTGGTGAGCGTGAGGTTGATTTTATCAATGTTGTTGCTT
GGGGAGGTTTGGCTGAAACCTTGGCTTCCTATGCTAGCAAGGGGAGCTTGCTGTCACTTGATGGCGAGCTTCGCACACGA
AAATATGACAAGGCAGGTCAGACTCATTTTGTGACAGAGGTTTTGTGTCATTCTTTTCAATTGCTGGAAAGTCGAGCGCA
ACGGGCCATACGTGAAAACAATGCTGCTAATGATTTGATTGATTTAGCCTTAGAGGAGGAAAATCTTCCCTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

77.099

100

0.771
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.992

100

0.71
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397

Multiple sequence alignment