Detailed information NTG1126575

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: E0F34_RS09390
• Genome accession: NZ_LR536843
• Coordinates: 1739216..1739611 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282443.1
• Uniprot ID: A0A0E8PDH7
• Organism: Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1734216..1744611

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
E0F34_RS09375	-	1735713..1737039 (+)	1327	Protein_1765	ISL3 family transposase	-
E0F34_RS09380 (SAMEA104035599_01789)	groL	1737138..1738760 (-)	1623	WP_000031573.1	chaperonin GroEL	-
E0F34_RS09385 (SAMEA104035599_01790)	groES	1738776..1739060 (-)	285	WP_000917299.1	co-chaperone GroES	-
E0F34_RS09390 (SAMEA104035599_01791)	ssbB/cilA	1739216..1739611 (-)	396	WP_000282443.1	single-stranded DNA-binding protein	Machinery gene
E0F34_RS09395 (SAMEA104035599_01792)	-	1739689..1740450 (-)	762	WP_001107758.1	SDR family NAD(P)-dependent oxidoreductase	-
E0F34_RS09400 (SAMEA104035599_01793)	ytpR	1740492..1741118 (-)	627	WP_000578313.1	YtpR family tRNA-binding protein	-
E0F34_RS09405 (SAMEA104035599_01794)	-	1741134..1741451 (-)	318	WP_000615767.1	thioredoxin family protein	-
E0F34_RS09410 (SAMEA104035599_01795)	-	1741448..1741747 (-)	300	WP_025171409.1	DUF4651 domain-containing protein	-
E0F34_RS11995	-	1741945..1742025 (-)	81	WP_223200442.1	hypothetical protein	-
E0F34_RS09420	-	1742032..1742223 (-)	192	WP_000291826.1	cell wall-binding protein	-
E0F34_RS09425 (SAMEA104035599_01796)	-	1742384..1743058 (-)	675	WP_000725749.1	LiaF transmembrane domain-containing protein	-
E0F34_RS09430 (SAMEA104035599_01797)	-	1743064..1743510 (-)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
E0F34_RS09435 (SAMEA104035599_01798)	-	1743624..1744127 (-)	504	WP_130885246.1	phosphatase PAP2 family protein	-
E0F34_RS09440 (SAMEA104035599_01799)	-	1744124..1744486 (-)	363	WP_000078805.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14935.91 Da
• Isoelectric Point: 5.9409

>NTDB_id=1126575 E0F34_RS09390 WP_000282443.1 1739216..1739611(-) (ssbB/cilA) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
MYNKVILIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREVDFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=1126575 E0F34_RS09390 WP_000282443.1 1739216..1739611(-) (ssbB/cilA) [Streptococcus pneumoniae strain GPSC55 substr. ST3774 isolate b04a6400-1f66-11e7-b93e-3c4a9275d6c8]
ATGTATAATAAAGTTATCTTGATTGGACGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCAGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGTTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: A0A0E8PDH7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus pneumoniae Rx1	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae D39	98.473	100	0.985
ssbB/cilA	Streptococcus pneumoniae R6	98.473	100	0.985
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	96.947	100	0.969
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405