Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   E0F39_RS09935 Genome accession   NZ_LR216060
Coordinates   1838704..1839099 (-) Length   131 a.a.
NCBI ID   WP_000282467.1    Uniprot ID   A0A098Z0L0
Organism   Streptococcus pneumoniae strain GPSC47 substr. ST315     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1833704..1844099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E0F39_RS09895 (SAMEA3713867_01872) - 1833820..1834353 (+) 534 WP_000775321.1 DUF402 domain-containing protein -
  E0F39_RS09905 - 1834710..1834889 (-) 180 Protein_1885 Rgg/GadR/MutR family transcriptional regulator -
  E0F39_RS09910 - 1834915..1835019 (-) 105 Protein_1886 IS5/IS1182 family transposase -
  E0F39_RS09920 (SAMEA3713867_01873) - 1835298..1836527 (+) 1230 WP_115264931.1 ISL3 family transposase -
  E0F39_RS09925 (SAMEA3713867_01874) groL 1836626..1838248 (-) 1623 WP_000031573.1 chaperonin GroEL -
  E0F39_RS09930 (SAMEA3713867_01875) groES 1838264..1838548 (-) 285 WP_000917304.1 co-chaperone GroES -
  E0F39_RS09935 (SAMEA3713867_01876) ssbB/cilA 1838704..1839099 (-) 396 WP_000282467.1 single-stranded DNA-binding protein Machinery gene
  E0F39_RS09940 (SAMEA3713867_01877) - 1839177..1839938 (-) 762 WP_001107745.1 SDR family NAD(P)-dependent oxidoreductase -
  E0F39_RS09945 (SAMEA3713867_01878) ytpR 1839971..1840597 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  E0F39_RS09950 (SAMEA3713867_01879) - 1840613..1840930 (-) 318 WP_000615767.1 thioredoxin family protein -
  E0F39_RS09955 (SAMEA3713867_01880) - 1840927..1841226 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  E0F39_RS12885 - 1841476..1841541 (-) 66 Protein_1895 choline-binding protein A -
  E0F39_RS09960 - 1841563..1841754 (-) 192 WP_000291826.1 cell wall-binding protein -
  E0F39_RS09965 (SAMEA3713867_01881) - 1841915..1842589 (-) 675 WP_000725742.1 LiaF transmembrane domain-containing protein -
  E0F39_RS09970 (SAMEA3713867_01882) - 1842595..1843041 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  E0F39_RS09975 (SAMEA3713867_01883) - 1843155..1843658 (-) 504 WP_000800947.1 phosphatase PAP2 family protein -
  E0F39_RS09980 (SAMEA3713867_01884) - 1843655..1844017 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14925.89 Da        Isoelectric Point: 5.9409

>NTDB_id=1126206 E0F39_RS09935 WP_000282467.1 1838704..1839099(-) (ssbB/cilA) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1126206 E0F39_RS09935 WP_000282467.1 1838704..1839099(-) (ssbB/cilA) [Streptococcus pneumoniae strain GPSC47 substr. ST315]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTCAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTTAATATGGTTCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGTCAGATGAATTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTGGAAAGTCGTGCCCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098Z0L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

100

100

1
  ssbB/cilA Streptococcus pneumoniae R6

100

100

1
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.237

100

0.992
  ssbB/cilA Streptococcus mitis SK321

98.473

100

0.985
  ssbB/cilA Streptococcus mitis NCTC 12261

98.473

100

0.985
  ssbA Streptococcus mutans UA159

74.809

100

0.748
  ssbB Streptococcus sobrinus strain NIDR 6715-7

70.229

100

0.702
  ssbB Lactococcus lactis subsp. cremoris KW2

59.821

85.496

0.511
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405

Multiple sequence alignment