Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | EL299_RS06170 | Genome accession | NZ_LR134536 |
| Coordinates | 1283827..1284144 (-) | Length | 105 a.a. |
| NCBI ID | WP_001831271.1 | Uniprot ID | A0A9Q5JKE9 |
| Organism | Staphylococcus epidermidis strain NCTC13924 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1278827..1289144
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL299_RS06135 (NCTC13924_01199) | gcvPA | 1279353..1280699 (-) | 1347 | WP_002456181.1 | aminomethyl-transferring glycine dehydrogenase subunit GcvPA | - |
| EL299_RS06140 (NCTC13924_01200) | gcvT | 1280719..1281810 (-) | 1092 | WP_001831107.1 | glycine cleavage system aminomethyltransferase GcvT | - |
| EL299_RS06145 | - | 1282028..1282540 (-) | 513 | WP_002440040.1 | shikimate kinase | - |
| EL299_RS06155 (NCTC13924_01203) | - | 1282705..1283196 (-) | 492 | WP_002440043.1 | competence type IV pilus minor pilin ComGF | - |
| EL299_RS06160 (NCTC13924_01204) | - | 1283120..1283413 (-) | 294 | WP_001831116.1 | hypothetical protein | - |
| EL299_RS06165 (NCTC13924_01205) | comGD | 1283400..1283837 (-) | 438 | WP_001831025.1 | competence type IV pilus minor pilin ComGD | - |
| EL299_RS06170 (NCTC13924_01206) | comGC | 1283827..1284144 (-) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| EL299_RS06175 (NCTC13924_01207) | comGB | 1284162..1285229 (-) | 1068 | WP_001831131.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| EL299_RS06180 (NCTC13924_01208) | comGA | 1285201..1286175 (-) | 975 | WP_001831109.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| EL299_RS06185 (NCTC13924_01209) | - | 1286232..1286855 (-) | 624 | WP_001831016.1 | MBL fold metallo-hydrolase | - |
| EL299_RS06190 (NCTC13924_01210) | - | 1286855..1287181 (-) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| EL299_RS06195 (NCTC13924_01211) | - | 1287181..1288167 (-) | 987 | WP_001831113.1 | ROK family glucokinase | - |
| EL299_RS06200 (NCTC13924_01212) | - | 1288167..1288367 (-) | 201 | WP_001831138.1 | YqgQ family protein | - |
Sequence
Protein
Download Length: 105 a.a. Molecular weight: 11491.58 Da Isoelectric Point: 9.7429
>NTDB_id=1124175 EL299_RS06170 WP_001831271.1 1283827..1284144(-) (comGC) [Staphylococcus epidermidis strain NCTC13924]
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
MKTLKLLKKTRAFTLIEMLLVLLIISLLLILIIPNIAKQTSHIQSTGCDAQVKMVNSQIEAYALKHNRNPSNIDDLVSDG
FIKEGQKTCKSGQTISIANGEAVAN
Nucleotide
Download Length: 318 bp
>NTDB_id=1124175 EL299_RS06170 WP_001831271.1 1283827..1284144(-) (comGC) [Staphylococcus epidermidis strain NCTC13924]
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
ATGAAAACATTGAAATTATTGAAAAAAACACGAGCATTTACCTTGATAGAAATGCTTTTAGTATTACTAATAATAAGTTT
ATTGTTAATACTTATAATTCCAAATATTGCAAAACAAACATCTCATATTCAGTCAACTGGATGTGATGCTCAAGTTAAAA
TGGTAAACAGTCAAATAGAAGCCTACGCTTTAAAACATAATCGCAACCCTTCTAATATTGATGATTTGGTTTCAGATGGT
TTTATAAAAGAAGGACAAAAAACATGTAAATCCGGTCAGACAATTAGTATTGCAAATGGAGAAGCAGTTGCCAATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Staphylococcus aureus MW2 |
87.255 |
97.143 |
0.848 |
| comGC | Staphylococcus aureus N315 |
87.255 |
97.143 |
0.848 |
| comGC/cglC | Streptococcus mitis SK321 |
44.66 |
98.095 |
0.438 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae D39 |
44.681 |
89.524 |
0.4 |
| comGC/cglC | Streptococcus pneumoniae R6 |
44.681 |
89.524 |
0.4 |
| comYC | Streptococcus mutans UA159 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus mutans UA140 |
47.674 |
81.905 |
0.39 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
46.512 |
81.905 |
0.381 |
| comGC | Lactococcus lactis subsp. cremoris KW2 |
47.561 |
78.095 |
0.371 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
50 |
74.286 |
0.371 |
| comYC | Streptococcus suis isolate S10 |
48.718 |
74.286 |
0.362 |
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
41.758 |
86.667 |
0.362 |