Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Machinery gene
Locus tag   EL309_RS04215 Genome accession   NZ_LR134533
Coordinates   860418..861659 (-) Length   413 a.a.
NCBI ID   WP_004282575.1    Uniprot ID   A0A3S5C3S6
Organism   Neisseria weaveri strain NCTC12742     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 855418..866659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS04185 (NCTC12742_00823) yjgA 855930..856445 (-) 516 WP_004282581.1 ribosome biogenesis factor YjgA -
  EL309_RS04190 (NCTC12742_00824) pmbA 856579..857907 (+) 1329 WP_004282580.1 metalloprotease PmbA -
  EL309_RS04195 (NCTC12742_00825) yacG 857972..858154 (-) 183 WP_081463174.1 DNA gyrase inhibitor YacG -
  EL309_RS04200 (NCTC12742_00826) zapD 858160..858933 (-) 774 WP_004282578.1 cell division protein ZapD -
  EL309_RS04205 (NCTC12742_00827) coaE 858930..859553 (-) 624 WP_004282577.1 dephospho-CoA kinase -
  EL309_RS04210 (NCTC12742_00828) pilD 859555..860415 (-) 861 WP_004285616.1 A24 family peptidase Machinery gene
  EL309_RS04215 (NCTC12742_00829) pilG 860418..861659 (-) 1242 WP_004282575.1 type II secretion system F family protein Machinery gene
  EL309_RS04220 (NCTC12742_00830) pilF 861683..863362 (-) 1680 WP_004282574.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EL309_RS04225 (NCTC12742_00831) comE 863589..863894 (-) 306 WP_064130790.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45676.95 Da        Isoelectric Point: 10.0967

>NTDB_id=1124113 EL309_RS04215 WP_004282575.1 860418..861659(-) (pilG) [Neisseria weaveri strain NCTC12742]
MNQVKFGERMLTRKDKGKRFTFEGKNISTEQIVRGEVVAKNEEEARAKLQRRGIRPLRVSKVKAVRQRRITQADITVFTR
QLATMMKAGLLLMQAFEIVARGHSNPAMTQMLMQIRADVEQGSSLSKAFSKHPKYFDRFYCNLIAAGETGGVLEGLLEKL
ALYKEKTQAIKKKVKSALVYPVAVIVVAVALLIVMMMFVLPAFKEVYSNMGAELPGMTQIVMGMSDFFVANGWLIIIGLI
LAGFGLYKWHQHSPSFQRKVDVLLLKLPIFGPIVRKAIIARWARTTATLFAAGVPLVEALDSIAGAAGNALYEEATHDIR
SKVTQGLSLTSSMQSTDLFPNMVLQMASIGEESGSLDDMLNKAAEFYEDEVDNAVSQLSSLMEPIIMVVLGLMIGFILIS
MYLPLFNLGNVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=1124113 EL309_RS04215 WP_004282575.1 860418..861659(-) (pilG) [Neisseria weaveri strain NCTC12742]
ATGAACCAAGTTAAATTTGGGGAGCGGATGCTTACTAGAAAAGACAAAGGCAAACGTTTTACTTTTGAAGGTAAGAATAT
TAGTACTGAGCAAATTGTGCGTGGCGAGGTAGTTGCTAAAAACGAGGAAGAAGCACGTGCTAAATTGCAAAGGAGAGGAA
TTCGTCCGTTACGTGTGAGCAAAGTAAAAGCAGTGCGCCAACGTAGAATTACTCAGGCCGATATTACTGTATTCACGCGT
CAATTAGCAACAATGATGAAAGCAGGCTTATTATTGATGCAGGCTTTTGAAATTGTAGCAAGAGGGCATTCTAATCCAGC
TATGACGCAAATGTTGATGCAGATTCGTGCAGATGTCGAGCAAGGTAGTTCGCTGAGCAAGGCATTTAGCAAACACCCTA
AATATTTTGACCGTTTTTATTGCAATTTGATTGCTGCGGGTGAAACAGGTGGTGTTTTGGAAGGTTTGTTGGAAAAACTG
GCTCTTTATAAAGAAAAGACTCAAGCCATCAAGAAAAAAGTAAAAAGTGCGTTGGTTTATCCTGTTGCGGTGATTGTGGT
TGCTGTTGCACTTTTGATCGTTATGATGATGTTTGTTTTACCGGCCTTTAAAGAAGTATATAGCAATATGGGGGCAGAAT
TGCCGGGGATGACCCAAATCGTGATGGGGATGTCGGATTTCTTTGTTGCTAATGGCTGGTTGATTATTATCGGTTTGATT
TTGGCTGGATTCGGTCTGTATAAATGGCATCAACATTCTCCGTCATTTCAAAGAAAAGTCGATGTCTTGTTGTTGAAATT
ACCGATTTTCGGGCCAATCGTCAGAAAAGCAATTATTGCCCGCTGGGCGCGCACTACGGCAACCTTGTTTGCTGCCGGTG
TTCCTTTGGTTGAAGCATTGGATTCTATTGCCGGAGCCGCGGGCAATGCTTTATATGAAGAAGCAACGCATGATATCCGT
TCTAAGGTAACCCAAGGTTTATCTTTGACTTCAAGTATGCAAAGTACAGATTTATTCCCAAATATGGTTTTGCAAATGGC
TTCCATTGGTGAAGAATCAGGTTCATTGGACGACATGTTGAATAAAGCTGCGGAATTTTACGAGGATGAAGTAGATAATG
CAGTGTCACAGCTTTCTTCTTTGATGGAGCCGATTATTATGGTCGTATTGGGTTTAATGATCGGATTCATATTGATTTCA
ATGTACTTACCGTTATTCAATTTGGGTAATGTGGTAGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(78-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3S5C3S6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Neisseria gonorrhoeae MS11

71.285

96.126

0.685
  pilG Neisseria meningitidis 44/76-A

70.529

96.126

0.678
  pilC Legionella pneumophila strain ERS1305867

47.118

96.61

0.455
  pilC Acinetobacter baylyi ADP1

45.387

97.094

0.441
  pilC Pseudomonas stutzeri DSM 10701

45.387

97.094

0.441
  pilC Acinetobacter baumannii D1279779

45.729

96.368

0.441
  pilC Vibrio cholerae strain A1552

39.75

96.852

0.385
  pilC Vibrio campbellii strain DS40M4

38.308

97.337

0.373

Multiple sequence alignment