Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   EL309_RS04225 Genome accession   NZ_LR134533
Coordinates   863589..863894 (-) Length   101 a.a.
NCBI ID   WP_064130790.1    Uniprot ID   A0A181CIZ3
Organism   Neisseria weaveri strain NCTC12742     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 858589..868894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL309_RS04205 (NCTC12742_00827) coaE 858930..859553 (-) 624 WP_004282577.1 dephospho-CoA kinase -
  EL309_RS04210 (NCTC12742_00828) pilD 859555..860415 (-) 861 WP_004285616.1 A24 family peptidase Machinery gene
  EL309_RS04215 (NCTC12742_00829) pilG 860418..861659 (-) 1242 WP_004282575.1 type II secretion system F family protein Machinery gene
  EL309_RS04220 (NCTC12742_00830) pilF 861683..863362 (-) 1680 WP_004282574.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EL309_RS04225 (NCTC12742_00831) comE 863589..863894 (-) 306 WP_064130790.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 101 a.a.        Molecular weight: 10473.38 Da        Isoelectric Point: 10.5494

>NTDB_id=1124115 EL309_RS04225 WP_064130790.1 863589..863894(-) (comE) [Neisseria weaveri strain NCTC12742]
MKRYLLGLAGVLLSALSLAAVNINTATAEELKALPGIGPAKAEAIVAYRSANGPFKAVEDLKKVKGIGEGVYGRLKDEAT
VAGVKKKEAKPLAKKDGSKKP

Nucleotide


Download         Length: 306 bp        

>NTDB_id=1124115 EL309_RS04225 WP_064130790.1 863589..863894(-) (comE) [Neisseria weaveri strain NCTC12742]
ATGAAACGATATCTGTTGGGTTTGGCCGGAGTGCTGCTGTCGGCGCTGTCCTTGGCGGCGGTGAACATCAACACCGCAAC
GGCGGAGGAATTGAAGGCGCTGCCGGGTATCGGTCCGGCGAAGGCGGAGGCGATTGTGGCCTACCGCAGTGCGAACGGTC
CGTTCAAAGCGGTGGAGGACTTGAAGAAGGTGAAGGGGATAGGCGAAGGCGTGTACGGCCGTCTGAAGGATGAGGCGACG
GTGGCGGGGGTGAAGAAGAAGGAGGCGAAGCCGCTGGCGAAGAAAGACGGAAGCAAAAAACCTTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A181CIZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comE Neisseria gonorrhoeae MS11

55.914

92.079

0.515
  comEA Vibrio parahaemolyticus RIMD 2210633

44.944

88.119

0.396
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.148

80.198

0.386

Multiple sequence alignment