Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | EL254_RS01200 | Genome accession | NZ_LR134512 |
| Coordinates | 198433..198828 (+) | Length | 131 a.a. |
| NCBI ID | WP_000282447.1 | Uniprot ID | A0AAV3JLT6 |
| Organism | Streptococcus agalactiae strain NCTC13949 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 193433..203828
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL254_RS01165 (NCTC13949_00231) | proC | 193827..194597 (-) | 771 | WP_001865901.1 | pyrroline-5-carboxylate reductase | - |
| EL254_RS01170 (NCTC13949_00232) | pepA | 194667..195734 (-) | 1068 | WP_001281321.1 | glutamyl aminopeptidase | - |
| EL254_RS01175 (NCTC13949_00233) | - | 195919..196158 (-) | 240 | WP_000660180.1 | hypothetical protein | - |
| EL254_RS01180 (NCTC13949_00234) | - | 196319..196603 (+) | 285 | WP_000791272.1 | DUF4651 domain-containing protein | - |
| EL254_RS01185 (NCTC13949_00235) | - | 196600..196923 (+) | 324 | WP_000602781.1 | thioredoxin family protein | - |
| EL254_RS01190 (NCTC13949_00236) | ytpR | 196956..197582 (+) | 627 | WP_000578328.1 | YtpR family tRNA-binding protein | - |
| EL254_RS01195 (NCTC13949_00237) | - | 197636..198352 (-) | 717 | WP_000186184.1 | class I SAM-dependent methyltransferase | - |
| EL254_RS01200 (NCTC13949_00238) | ssbA | 198433..198828 (+) | 396 | WP_000282447.1 | single-stranded DNA-binding protein | Machinery gene |
| EL254_RS01205 (NCTC13949_00239) | - | 198952..199596 (+) | 645 | WP_000416612.1 | HAD family hydrolase | - |
| EL254_RS01210 (NCTC13949_00240) | - | 199623..201368 (+) | 1746 | WP_000930334.1 | LytS/YhcK type 5TM receptor domain-containing protein | - |
| EL254_RS01215 (NCTC13949_00241) | - | 201349..202089 (+) | 741 | WP_000697630.1 | LytR/AlgR family response regulator transcription factor | - |
| EL254_RS01220 (NCTC13949_00242) | - | 202259..202714 (+) | 456 | WP_000683316.1 | CidA/LrgA family protein | - |
| EL254_RS01225 (NCTC13949_00243) | lrgB | 202716..203444 (+) | 729 | WP_000421726.1 | antiholin-like protein LrgB | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14774.80 Da Isoelectric Point: 7.0189
>NTDB_id=1123610 EL254_RS01200 WP_000282447.1 198433..198828(+) (ssbA) [Streptococcus agalactiae strain NCTC13949]
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
MYNKVIMIGRLTAKPEMVKTPTDKSVTRATVAVNRRFKGSNGEREADFINVVMWGRLAETLASYGTKGSLISIDGELRTR
KYEKDGQTHYITEVLASSFQLLESRAQRAMRENNVSGDLSDLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=1123610 EL254_RS01200 WP_000282447.1 198433..198828(+) (ssbA) [Streptococcus agalactiae strain NCTC13949]
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
ATGTATAATAAAGTTATTATGATTGGGCGTCTAACAGCAAAGCCTGAGATGGTAAAAACACCAACTGACAAGTCAGTGAC
GCGTGCAACTGTTGCTGTTAATAGACGCTTTAAAGGAAGTAATGGTGAGCGTGAAGCAGATTTTATTAATGTGGTTATGT
GGGGTCGTCTAGCGGAAACCCTTGCGAGCTATGGGACAAAGGGCTCTTTAATTTCAATAGATGGTGAATTGCGTACGCGC
AAGTACGAAAAGGATGGTCAAACGCACTATATCACTGAAGTATTAGCATCATCATTTCAGTTGCTAGAAAGCCGTGCCCA
ACGTGCTATGCGTGAAAATAACGTTTCTGGTGATTTGTCAGATTTAGTATTGGAAGAAGAGGAGCTCCCCTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Streptococcus mutans UA159 |
80.916 |
100 |
0.809 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
77.863 |
100 |
0.779 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
77.099 |
100 |
0.771 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
77.099 |
100 |
0.771 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
76.336 |
100 |
0.763 |
| ssbB/cilA | Streptococcus mitis SK321 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
60.526 |
87.023 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.943 |
80.916 |
0.412 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |