Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | EL249_RS04280 | Genome accession | NZ_LR134378 |
| Coordinates | 1054182..1055429 (-) | Length | 415 a.a. |
| NCBI ID | WP_005674125.1 | Uniprot ID | - |
| Organism | Lautropia mirabilis strain NCTC12852 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1049182..1060429
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL249_RS04260 (NCTC12852_00846) | - | 1051040..1051261 (-) | 222 | WP_005674129.1 | DNA gyrase inhibitor YacG | - |
| EL249_RS04265 (NCTC12852_00847) | zapD | 1051261..1052016 (-) | 756 | WP_005674128.1 | cell division protein ZapD | - |
| EL249_RS04270 (NCTC12852_00848) | coaE | 1052212..1052901 (-) | 690 | WP_005674127.1 | dephospho-CoA kinase | - |
| EL249_RS04275 (NCTC12852_00849) | pilD | 1053053..1053970 (-) | 918 | WP_005674126.1 | prepilin peptidase | Machinery gene |
| EL249_RS04280 (NCTC12852_00850) | pilC | 1054182..1055429 (-) | 1248 | WP_005674125.1 | type II secretion system F family protein | Machinery gene |
| EL249_RS04285 (NCTC12852_00851) | pilB | 1055510..1057309 (-) | 1800 | WP_005674124.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| EL249_RS04290 (NCTC12852_00852) | - | 1057486..1058454 (-) | 969 | WP_040531668.1 | Dyp-type peroxidase | - |
| EL249_RS04295 (NCTC12852_00853) | - | 1059079..1060377 (+) | 1299 | WP_005674120.1 | MFS transporter | - |
Sequence
Protein
Download Length: 415 a.a. Molecular weight: 45395.49 Da Isoelectric Point: 10.0192
>NTDB_id=1122464 EL249_RS04280 WP_005674125.1 1054182..1055429(-) (pilC) [Lautropia mirabilis strain NCTC12852]
MAAKAMTASGAKSATSRPKEFNFVWEGRDRAGKTLRGETRASGETIVVNTLRRQGIVVTRIKKQRYKAARGKIQDKDITL
FTRQLATMMKAGVPLLQAFDIVAKGTDNGAVAKLFTDIKADVETGTALSQAFRKYPLYFDNLFCNLVGAGEQAGILDDLL
DRLAMYKEKMEAIKAKIKSALFYPTAVMVVAFIVVAVIMLFVVPAFKSVFESFGADLPAPTLFVMALSDYFVQNWYIIFG
GIGLGIYFFLQAWKRSPKMQMFMDRLFLKLPIFGPVIRKATIARWLRTLSTMFAAGVPLVEALDSVGGAAGNIVYLQATK
KIQQEVSTGTSLTVAMNNANVFPNMVLQMASIGEESGSLDSMLGKSADVYEREVDDAVESLSSLMEPLIMVVLGTLIGGL
VVAMYLPIFKLGQVV
MAAKAMTASGAKSATSRPKEFNFVWEGRDRAGKTLRGETRASGETIVVNTLRRQGIVVTRIKKQRYKAARGKIQDKDITL
FTRQLATMMKAGVPLLQAFDIVAKGTDNGAVAKLFTDIKADVETGTALSQAFRKYPLYFDNLFCNLVGAGEQAGILDDLL
DRLAMYKEKMEAIKAKIKSALFYPTAVMVVAFIVVAVIMLFVVPAFKSVFESFGADLPAPTLFVMALSDYFVQNWYIIFG
GIGLGIYFFLQAWKRSPKMQMFMDRLFLKLPIFGPVIRKATIARWLRTLSTMFAAGVPLVEALDSVGGAAGNIVYLQATK
KIQQEVSTGTSLTVAMNNANVFPNMVLQMASIGEESGSLDSMLGKSADVYEREVDDAVESLSSLMEPLIMVVLGTLIGGL
VVAMYLPIFKLGQVV
Nucleotide
Download Length: 1248 bp
>NTDB_id=1122464 EL249_RS04280 WP_005674125.1 1054182..1055429(-) (pilC) [Lautropia mirabilis strain NCTC12852]
ATGGCAGCCAAGGCAATGACCGCATCGGGCGCAAAGAGCGCCACCTCGCGGCCCAAGGAATTCAACTTCGTCTGGGAAGG
GCGCGACCGCGCCGGTAAGACGCTGCGCGGTGAAACCCGGGCCAGCGGCGAAACCATCGTCGTCAACACCCTGCGCCGGC
AGGGCATCGTCGTCACGCGCATCAAGAAGCAGCGCTACAAGGCGGCACGCGGCAAGATCCAGGACAAGGACATCACGCTG
TTCACGCGCCAGCTGGCCACCATGATGAAGGCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTGGCCAAGGGGACCGA
CAACGGCGCCGTGGCCAAGCTCTTCACCGACATCAAGGCCGATGTGGAAACCGGTACCGCGCTGTCGCAAGCCTTCCGCA
AGTATCCCCTGTACTTCGACAACCTCTTCTGCAACCTGGTGGGCGCGGGTGAACAGGCCGGTATTCTGGACGACCTGCTG
GACCGGCTGGCCATGTACAAGGAGAAGATGGAGGCCATCAAGGCCAAGATCAAATCCGCCCTCTTCTACCCCACGGCCGT
GATGGTGGTGGCCTTCATCGTGGTGGCGGTGATCATGCTGTTCGTGGTTCCCGCCTTCAAGAGCGTGTTCGAGAGCTTCG
GCGCCGACCTGCCCGCTCCCACGCTGTTCGTGATGGCGCTGTCGGACTACTTCGTCCAGAACTGGTACATCATCTTCGGC
GGCATCGGCCTGGGCATCTACTTCTTCCTGCAGGCCTGGAAGCGCTCGCCCAAGATGCAGATGTTCATGGACCGGCTGTT
CCTGAAGCTGCCCATCTTCGGGCCGGTCATCCGCAAGGCCACCATCGCGCGCTGGCTGCGCACGCTGTCCACCATGTTCG
CTGCTGGCGTGCCGCTGGTCGAAGCCCTGGACTCGGTGGGCGGCGCCGCAGGCAACATCGTCTACCTGCAGGCCACCAAG
AAGATCCAGCAGGAAGTCTCCACCGGTACCAGCCTGACGGTGGCCATGAACAACGCCAACGTCTTCCCCAACATGGTGCT
GCAGATGGCCTCCATCGGCGAGGAATCCGGTTCGCTGGACTCCATGCTGGGCAAGTCCGCCGACGTGTATGAGCGCGAGG
TGGACGATGCGGTGGAAAGCCTCTCCTCCCTGATGGAACCGCTGATCATGGTGGTGCTGGGCACGCTGATCGGTGGTCTG
GTGGTGGCCATGTATCTGCCCATCTTCAAGCTGGGTCAGGTAGTGTAA
ATGGCAGCCAAGGCAATGACCGCATCGGGCGCAAAGAGCGCCACCTCGCGGCCCAAGGAATTCAACTTCGTCTGGGAAGG
GCGCGACCGCGCCGGTAAGACGCTGCGCGGTGAAACCCGGGCCAGCGGCGAAACCATCGTCGTCAACACCCTGCGCCGGC
AGGGCATCGTCGTCACGCGCATCAAGAAGCAGCGCTACAAGGCGGCACGCGGCAAGATCCAGGACAAGGACATCACGCTG
TTCACGCGCCAGCTGGCCACCATGATGAAGGCCGGCGTGCCGCTGCTGCAGGCCTTCGACATCGTGGCCAAGGGGACCGA
CAACGGCGCCGTGGCCAAGCTCTTCACCGACATCAAGGCCGATGTGGAAACCGGTACCGCGCTGTCGCAAGCCTTCCGCA
AGTATCCCCTGTACTTCGACAACCTCTTCTGCAACCTGGTGGGCGCGGGTGAACAGGCCGGTATTCTGGACGACCTGCTG
GACCGGCTGGCCATGTACAAGGAGAAGATGGAGGCCATCAAGGCCAAGATCAAATCCGCCCTCTTCTACCCCACGGCCGT
GATGGTGGTGGCCTTCATCGTGGTGGCGGTGATCATGCTGTTCGTGGTTCCCGCCTTCAAGAGCGTGTTCGAGAGCTTCG
GCGCCGACCTGCCCGCTCCCACGCTGTTCGTGATGGCGCTGTCGGACTACTTCGTCCAGAACTGGTACATCATCTTCGGC
GGCATCGGCCTGGGCATCTACTTCTTCCTGCAGGCCTGGAAGCGCTCGCCCAAGATGCAGATGTTCATGGACCGGCTGTT
CCTGAAGCTGCCCATCTTCGGGCCGGTCATCCGCAAGGCCACCATCGCGCGCTGGCTGCGCACGCTGTCCACCATGTTCG
CTGCTGGCGTGCCGCTGGTCGAAGCCCTGGACTCGGTGGGCGGCGCCGCAGGCAACATCGTCTACCTGCAGGCCACCAAG
AAGATCCAGCAGGAAGTCTCCACCGGTACCAGCCTGACGGTGGCCATGAACAACGCCAACGTCTTCCCCAACATGGTGCT
GCAGATGGCCTCCATCGGCGAGGAATCCGGTTCGCTGGACTCCATGCTGGGCAAGTCCGCCGACGTGTATGAGCGCGAGG
TGGACGATGCGGTGGAAAGCCTCTCCTCCCTGATGGAACCGCTGATCATGGTGGTGCTGGGCACGCTGATCGGTGGTCTG
GTGGTGGCCATGTATCTGCCCATCTTCAAGCTGGGTCAGGTAGTGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
53.598 |
97.108 |
0.52 |
| pilC | Acinetobacter baylyi ADP1 |
53.149 |
95.663 |
0.508 |
| pilC | Acinetobacter baumannii D1279779 |
52.764 |
95.904 |
0.506 |
| pilC | Pseudomonas stutzeri DSM 10701 |
52.658 |
95.181 |
0.501 |
| pilG | Neisseria gonorrhoeae MS11 |
51.759 |
95.904 |
0.496 |
| pilG | Neisseria meningitidis 44/76-A |
51.508 |
95.904 |
0.494 |
| pilC | Vibrio campbellii strain DS40M4 |
40.741 |
97.59 |
0.398 |
| pilC | Vibrio cholerae strain A1552 |
41.206 |
95.904 |
0.395 |
| pilC | Thermus thermophilus HB27 |
36.715 |
99.759 |
0.366 |