Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   EL147_RS05335 Genome accession   NZ_LR134341
Coordinates   1120414..1121355 (-) Length   313 a.a.
NCBI ID   WP_007895682.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1115414..1126355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS05295 (NCTC13786_01058) - 1115418..1116611 (-) 1194 WP_007895376.1 acetate kinase -
  EL147_RS05300 (NCTC13786_01059) comYH 1116667..1117623 (-) 957 WP_007895578.1 class I SAM-dependent methyltransferase Machinery gene
  EL147_RS05305 (NCTC13786_01060) comGG 1117668..1118069 (-) 402 WP_007895389.1 competence type IV pilus minor pilin ComGG -
  EL147_RS05310 (NCTC13786_01061) comGF 1118047..1118508 (-) 462 WP_007895294.1 competence type IV pilus minor pilin ComGF -
  EL147_RS05315 comGE 1118468..1118680 (-) 213 WP_255261105.1 competence system putative prepilin ComGE -
  EL147_RS05320 (NCTC13786_01062) comGD 1118733..1119071 (-) 339 WP_007896399.1 competence type IV pilus minor pilin ComGD -
  EL147_RS05325 comGC 1119121..1119447 (-) 327 Protein_1025 competence type IV pilus major pilin ComGC -
  EL147_RS05330 (NCTC13786_01064) comYB 1119447..1120532 (-) 1086 WP_255261104.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL147_RS05335 (NCTC13786_01065) comYA 1120414..1121355 (-) 942 WP_007895682.1 competence type IV pilus ATPase ComGA Machinery gene
  EL147_RS05340 (NCTC13786_01066) - 1121436..1121801 (-) 366 WP_007895383.1 DUF1033 family protein -
  EL147_RS05345 (NCTC13786_01067) rpoC 1121927..1125562 (-) 3636 WP_037598914.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 35437.88 Da        Isoelectric Point: 8.3998

>NTDB_id=1122007 EL147_RS05335 WP_007895682.1 1120414..1121355(-) (comYA) [Streptococcus pseudoporcinus strain NCTC13786]
MIQKIGQALVSQAVNLNAQDIYIIPYEKQYKVFMRIGDERRLIDQYEMKQMASLISHFKFVAGMNVGEKRRCQLGACDYK
GNLSESVPLRLSSVGDFRGFESLVIRLLTTVNKPLNYWFSTDQKVEKVISGRGLYLFSGPVGSGKTSLMYQLLTRIAKDK
QVITIEDPVEIQEASLLQIQVNESIGMTYDNLIKLSLRHRPDYLIIGEIRDAETAKAVIRASLTGAVVFSTIHAKSIPGV
YKRLLELGIKREEIQHTLKFIAYQRLIAGGGLIDFAIETFETHSNQNWNQNLDHLLEQGHITQEQALSEKISD

Nucleotide


Download         Length: 942 bp        

>NTDB_id=1122007 EL147_RS05335 WP_007895682.1 1120414..1121355(-) (comYA) [Streptococcus pseudoporcinus strain NCTC13786]
ATGATACAAAAAATAGGTCAAGCATTAGTTAGTCAGGCGGTTAATCTGAATGCGCAAGATATTTACATAATCCCTTATGA
AAAGCAGTATAAAGTCTTCATGAGAATTGGAGATGAGAGGCGATTGATTGACCAATATGAAATGAAGCAGATGGCAAGTC
TTATTAGCCATTTTAAGTTTGTAGCAGGAATGAATGTAGGAGAAAAGAGACGCTGTCAATTGGGAGCCTGTGACTACAAA
GGAAACTTATCAGAATCAGTCCCGTTACGTTTATCTTCTGTGGGAGATTTTAGAGGTTTTGAAAGCTTAGTCATTAGGCT
CTTAACAACTGTTAATAAACCCCTCAATTACTGGTTTAGTACGGATCAAAAAGTCGAAAAAGTTATCTCTGGAAGAGGTC
TCTACCTTTTCTCTGGTCCTGTAGGGTCGGGGAAAACGAGTCTCATGTATCAGCTACTGACACGCATAGCAAAGGATAAA
CAAGTCATAACAATTGAAGATCCAGTTGAGATTCAAGAAGCTAGCTTGTTACAAATTCAAGTGAATGAAAGTATTGGAAT
GACTTATGATAACCTTATTAAACTTTCCCTTAGACATCGTCCAGATTATTTGATTATTGGAGAGATTCGTGATGCTGAAA
CCGCCAAGGCAGTTATTAGAGCAAGCTTAACAGGAGCTGTAGTCTTTTCTACTATTCATGCCAAAAGTATTCCAGGAGTA
TATAAAAGATTATTAGAACTAGGTATCAAAAGAGAAGAGATACAGCATACTCTAAAATTTATTGCTTACCAAAGGTTGAT
AGCAGGAGGAGGACTTATTGACTTTGCCATCGAGACATTCGAAACCCATTCCAATCAAAACTGGAATCAAAACCTTGATC
ACTTACTTGAACAAGGACATATCACTCAGGAACAAGCACTCTCAGAAAAAATTAGCGACTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA159

63.578

100

0.636
  comYA Streptococcus mutans UA140

63.578

100

0.636
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

61.218

99.681

0.61
  comYA Streptococcus gordonii str. Challis substr. CH1

61.022

100

0.61
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

58.333

99.681

0.581
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

58.013

99.681

0.578
  comGA/cglA/cilD Streptococcus pneumoniae D39

58.013

99.681

0.578
  comGA/cglA/cilD Streptococcus pneumoniae R6

58.013

99.681

0.578
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

58.013

99.681

0.578
  comGA Lactococcus lactis subsp. cremoris KW2

52.885

99.681

0.527

Multiple sequence alignment