Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   EL147_RS05300 Genome accession   NZ_LR134341
Coordinates   1116667..1117623 (-) Length   318 a.a.
NCBI ID   WP_007895578.1    Uniprot ID   G5KA07
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1111667..1122623
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS05270 (NCTC13786_01053) pepA 1111790..1112857 (+) 1068 WP_007895486.1 glutamyl aminopeptidase -
  EL147_RS05275 (NCTC13786_01054) proC 1112876..1113646 (+) 771 WP_007895331.1 pyrroline-5-carboxylate reductase -
  EL147_RS05280 (NCTC13786_01055) - 1113824..1114471 (-) 648 WP_007895353.1 CPBP family intramembrane glutamic endopeptidase -
  EL147_RS05285 (NCTC13786_01056) - 1114483..1114935 (-) 453 WP_007895660.1 hypothetical protein -
  EL147_RS05290 (NCTC13786_01057) - 1114932..1115141 (-) 210 WP_007895522.1 helix-turn-helix transcriptional regulator -
  EL147_RS05295 (NCTC13786_01058) - 1115418..1116611 (-) 1194 WP_007895376.1 acetate kinase -
  EL147_RS05300 (NCTC13786_01059) comYH 1116667..1117623 (-) 957 WP_007895578.1 class I SAM-dependent methyltransferase Machinery gene
  EL147_RS05305 (NCTC13786_01060) comGG 1117668..1118069 (-) 402 WP_007895389.1 competence type IV pilus minor pilin ComGG -
  EL147_RS05310 (NCTC13786_01061) comGF 1118047..1118508 (-) 462 WP_007895294.1 competence type IV pilus minor pilin ComGF -
  EL147_RS05315 comGE 1118468..1118680 (-) 213 WP_255261105.1 competence system putative prepilin ComGE -
  EL147_RS05320 (NCTC13786_01062) comGD 1118733..1119071 (-) 339 WP_007896399.1 competence type IV pilus minor pilin ComGD -
  EL147_RS05325 comGC 1119121..1119447 (-) 327 Protein_1025 competence type IV pilus major pilin ComGC -
  EL147_RS05330 (NCTC13786_01064) comYB 1119447..1120532 (-) 1086 WP_255261104.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL147_RS05335 (NCTC13786_01065) comYA 1120414..1121355 (-) 942 WP_007895682.1 competence type IV pilus ATPase ComGA Machinery gene
  EL147_RS05340 (NCTC13786_01066) - 1121436..1121801 (-) 366 WP_007895383.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35975.02 Da        Isoelectric Point: 4.8716

>NTDB_id=1122005 EL147_RS05300 WP_007895578.1 1116667..1117623(-) (comYH) [Streptococcus pseudoporcinus strain NCTC13786]
MNFEKIEKAYELILENSQLIENELKTHIYDALIEQNAYYLGADGAIEQVLKNNGDLHALNLSKEEWRRAFQFVFIKAGQT
AKLQANHQFTPDSIAFIILFLMEQLHSGDSLDVIEIGSGTGNLAQTLLNNSLKKINYLGLELDDLLIDLSASIAEVMKSS
AIFLQEDAVRPQVLKESDIIISDLPIGYYPNDEIASRYQVASAEGHTYAHHLLMEQSLKYLKKNGFAIFLAPSNLLNSPQ
SDVLKKWLKDYAQLRAVVTLPESIFGNQANAKSIIVLQKNTEKNGETFVYPLTDLQSPQALQRFMEEFKKWKQDNVFS

Nucleotide


Download         Length: 957 bp        

>NTDB_id=1122005 EL147_RS05300 WP_007895578.1 1116667..1117623(-) (comYH) [Streptococcus pseudoporcinus strain NCTC13786]
ATGAACTTTGAAAAAATTGAGAAAGCCTACGAGCTTATTTTGGAGAATAGTCAACTCATTGAGAATGAGCTTAAGACGCA
TATTTATGATGCTCTAATTGAGCAGAATGCCTATTATTTAGGAGCTGATGGAGCCATTGAGCAGGTCTTGAAAAACAATG
GCGACTTGCATGCTTTAAACTTAAGTAAGGAAGAGTGGCGTCGCGCCTTTCAGTTTGTTTTTATAAAGGCTGGCCAGACG
GCAAAATTACAAGCTAATCACCAATTTACCCCCGACAGTATTGCTTTTATCATACTTTTTTTGATGGAGCAGTTGCATAG
CGGGGATAGCTTGGACGTGATTGAGATTGGTAGTGGCACAGGAAACCTTGCTCAGACGCTATTAAATAATAGTCTTAAAA
AGATCAACTATCTGGGTTTAGAACTAGATGATTTATTAATTGATTTGTCAGCCAGTATTGCTGAGGTGATGAAATCCTCT
GCAATCTTTCTCCAAGAAGATGCTGTTCGCCCACAAGTGCTAAAAGAAAGTGATATTATCATTAGTGATTTACCTATTGG
TTATTATCCTAATGATGAGATTGCAAGTCGCTATCAGGTGGCAAGTGCTGAAGGTCATACATATGCCCATCATTTATTGA
TGGAGCAATCATTGAAGTATCTCAAAAAGAATGGCTTTGCGATTTTCCTAGCACCGAGCAATCTTTTAAACAGTCCGCAA
AGTGATGTGTTGAAAAAATGGTTAAAAGACTATGCTCAGCTGAGAGCGGTCGTGACCCTGCCAGAATCTATTTTTGGCAA
TCAAGCAAATGCAAAATCCATTATTGTCCTACAAAAGAACACTGAAAAAAATGGTGAAACCTTTGTTTACCCACTGACAG
ATTTACAATCACCACAGGCTCTTCAAAGGTTTATGGAAGAGTTCAAAAAATGGAAACAAGATAATGTTTTTTCATAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(76-295)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KA07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

67.508

99.686

0.673
  comYH Streptococcus mutans UA140

67.192

99.686

0.67

Multiple sequence alignment