Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   EL147_RS05330 Genome accession   NZ_LR134341
Coordinates   1119447..1120532 (-) Length   361 a.a.
NCBI ID   WP_255261104.1    Uniprot ID   -
Organism   Streptococcus pseudoporcinus strain NCTC13786     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1114447..1125532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL147_RS05285 (NCTC13786_01056) - 1114483..1114935 (-) 453 WP_007895660.1 hypothetical protein -
  EL147_RS05290 (NCTC13786_01057) - 1114932..1115141 (-) 210 WP_007895522.1 helix-turn-helix transcriptional regulator -
  EL147_RS05295 (NCTC13786_01058) - 1115418..1116611 (-) 1194 WP_007895376.1 acetate kinase -
  EL147_RS05300 (NCTC13786_01059) comYH 1116667..1117623 (-) 957 WP_007895578.1 class I SAM-dependent methyltransferase Machinery gene
  EL147_RS05305 (NCTC13786_01060) comGG 1117668..1118069 (-) 402 WP_007895389.1 competence type IV pilus minor pilin ComGG -
  EL147_RS05310 (NCTC13786_01061) comGF 1118047..1118508 (-) 462 WP_007895294.1 competence type IV pilus minor pilin ComGF -
  EL147_RS05315 comGE 1118468..1118680 (-) 213 WP_255261105.1 competence system putative prepilin ComGE -
  EL147_RS05320 (NCTC13786_01062) comGD 1118733..1119071 (-) 339 WP_007896399.1 competence type IV pilus minor pilin ComGD -
  EL147_RS05325 comGC 1119121..1119447 (-) 327 Protein_1025 competence type IV pilus major pilin ComGC -
  EL147_RS05330 (NCTC13786_01064) comYB 1119447..1120532 (-) 1086 WP_255261104.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL147_RS05335 (NCTC13786_01065) comYA 1120414..1121355 (-) 942 WP_007895682.1 competence type IV pilus ATPase ComGA Machinery gene
  EL147_RS05340 (NCTC13786_01066) - 1121436..1121801 (-) 366 WP_007895383.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 361 a.a.        Molecular weight: 41550.61 Da        Isoelectric Point: 9.7686

>NTDB_id=1122006 EL147_RS05330 WP_255261104.1 1119447..1120532(-) (comYB) [Streptococcus pseudoporcinus strain NCTC13786]
MPSRHSKPIPIKTGIKTLITYLNKDISLRNKHSQKKLATKKQAKLIQLLHNLSQSGFNLAEMLAFLEKTQLLDQAYIDLL
KTDLLNGYSLSEMMRHLGFPDGIITQLSLAEAHGNTKKCLGKIEDYMAQTQKIKQKTIEVVTYPIILITFLIVIVLGLRH
YLMPQMEQEITLTYFLNNFPVYLLSLSIIVLITVIALAIRWRKLKKMKQMIEYSRIPLLAPFLKLYMTAFYAREWGNLIS
QGIELSQIVTIMSTEKSDLIKEIGLDMKQSFLEGQSFHEKVKTYPFFSDELSLMIEYGEIKGKLGQELDIYGQLIWDAYF
RKLLQATQIIQPFIFMIVALIIVMIYAAMLLPMYHTIGGTI

Nucleotide


Download         Length: 1086 bp        

>NTDB_id=1122006 EL147_RS05330 WP_255261104.1 1119447..1120532(-) (comYB) [Streptococcus pseudoporcinus strain NCTC13786]
TTGCCATCGAGACATTCGAAACCCATTCCAATCAAAACTGGAATCAAAACCTTGATCACTTACTTGAACAAGGACATATC
ACTCAGGAACAAGCACTCTCAGAAAAAATTAGCGACTAAAAAACAGGCTAAATTGATCCAACTCTTACATAATTTAAGCC
AAAGTGGCTTTAATCTAGCAGAAATGCTTGCCTTTCTAGAGAAAACACAGCTTTTAGACCAGGCTTATATTGACTTGTTA
AAGACTGATTTGTTAAATGGTTACAGTTTATCGGAAATGATGAGACATTTAGGATTTCCTGATGGGATTATTACCCAACT
AAGCTTGGCTGAAGCTCATGGCAATACCAAAAAATGCTTGGGAAAAATTGAAGACTACATGGCACAGACGCAAAAGATTA
AGCAAAAGACAATTGAAGTCGTGACTTACCCCATCATTCTCATCACCTTTTTAATTGTAATCGTCCTAGGCCTGAGACAT
TACTTAATGCCTCAGATGGAACAAGAAATCACTTTGACCTATTTTCTTAATAATTTTCCAGTCTACCTACTAAGTCTATC
AATTATTGTCCTGATTACAGTTATTGCTTTAGCTATCAGATGGCGGAAACTTAAAAAGATGAAACAGATGATAGAGTATA
GTCGGATACCCTTGCTAGCACCCTTCTTAAAGCTTTATATGACAGCCTTTTATGCGCGTGAGTGGGGAAATCTAATTAGT
CAAGGTATTGAACTAAGTCAAATAGTAACCATTATGAGTACTGAAAAATCTGACTTGATAAAAGAAATAGGCTTAGATAT
GAAACAATCATTTCTTGAGGGGCAGAGTTTCCACGAAAAAGTGAAGACATATCCCTTCTTCAGTGATGAGTTGAGTTTGA
TGATTGAATATGGTGAAATTAAAGGGAAATTAGGACAAGAACTGGATATTTATGGCCAACTGATATGGGATGCCTATTTT
CGAAAGCTCTTACAGGCGACGCAAATCATCCAACCTTTTATATTTATGATTGTCGCTTTGATCATTGTCATGATTTATGC
CGCTATGCTATTGCCGATGTATCACACGATTGGAGGAACAATATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(232-352)

Type II secretion system (T2SS), protein F (T2SSF)

(46-164)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus mutans UA140

51.765

94.183

0.488
  comYB Streptococcus mutans UA159

51.765

94.183

0.488
  comGB/cglB Streptococcus mitis SK321

48.048

92.244

0.443
  comGB/cglB Streptococcus mitis NCTC 12261

47.748

92.244

0.44
  comYB Streptococcus gordonii str. Challis substr. CH1

45

94.183

0.424
  comGB/cglB Streptococcus pneumoniae Rx1

45.646

92.244

0.421
  comGB/cglB Streptococcus pneumoniae D39

45.646

92.244

0.421
  comGB/cglB Streptococcus pneumoniae R6

45.646

92.244

0.421
  comGB/cglB Streptococcus pneumoniae TIGR4

45.646

92.244

0.421
  comGB Lactococcus lactis subsp. cremoris KW2

42.249

91.136

0.385

Multiple sequence alignment