Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC/celB   Type   Machinery gene
Locus tag   EL133_RS02945 Genome accession   NZ_LR134323
Coordinates   573677..574081 (+) Length   134 a.a.
NCBI ID   WP_006740411.1    Uniprot ID   G5KDJ4
Organism   Streptococcus urinalis strain NCTC13766     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 568677..579081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL133_RS02920 (NCTC13766_00594) - 569416..570339 (-) 924 WP_006739084.1 polysaccharide deacetylase family protein -
  EL133_RS02925 (NCTC13766_00595) - 570466..571206 (+) 741 WP_006738486.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  EL133_RS02930 (NCTC13766_00597) comEA 571383..571853 (+) 471 WP_006739527.1 helix-hairpin-helix domain-containing protein Machinery gene
  EL133_RS11550 (NCTC13766_00598) - 572074..572814 (+) 741 WP_040832718.1 ComEC/Rec2 family competence protein -
  EL133_RS11795 (NCTC13766_00599) - 572705..573304 (+) 600 WP_406874637.1 ComEC/Rec2 family competence protein -
  EL133_RS02940 (NCTC13766_00600) comEC 573364..573663 (+) 300 WP_006738752.1 MBL fold metallo-hydrolase Machinery gene
  EL133_RS02945 (NCTC13766_00601) comEC/celB 573677..574081 (+) 405 WP_006740411.1 ComEC/Rec2 family competence protein Machinery gene
  EL133_RS02950 (NCTC13766_00602) - 574204..574632 (+) 429 WP_006740037.1 PTS sugar transporter subunit IIA -
  EL133_RS02955 (NCTC13766_00603) - 574643..575134 (+) 492 WP_006739599.1 PTS sugar transporter subunit IIB -
  EL133_RS02960 (NCTC13766_00604) - 575151..575963 (+) 813 WP_006739400.1 PTS mannose/fructose/sorbose/N-acetylgalactosamine transporter subunit IIC -
  EL133_RS02965 (NCTC13766_00605) - 575960..576787 (+) 828 WP_006739879.1 PTS system mannose/fructose/sorbose family transporter subunit IID -
  EL133_RS02970 (NCTC13766_00606) - 576873..578510 (+) 1638 WP_006738925.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15604.94 Da        Isoelectric Point: 10.3044

>NTDB_id=1121527 EL133_RS02945 WP_006740411.1 573677..574081(+) (comEC/celB) [Streptococcus urinalis strain NCTC13766]
MNSQLEVIYPWKIGDGKNNDSIVLYGKLLDKRFLFTGDLEKDGEMKILKRYSKIPIDILKVGHHGSKGSSDQRFLDFINP
KIAFISAGKNNRFKHPHQETLDRLNDKKIKIYRTDQQGAIRLYGNQTWQIETVR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=1121527 EL133_RS02945 WP_006740411.1 573677..574081(+) (comEC/celB) [Streptococcus urinalis strain NCTC13766]
ATGAATTCACAACTTGAAGTAATCTATCCCTGGAAAATTGGAGATGGGAAAAATAACGATTCTATAGTCTTATATGGAAA
ATTATTAGACAAACGGTTTTTATTTACTGGAGATTTAGAAAAAGATGGAGAGATGAAAATACTAAAACGTTATTCAAAAA
TACCCATAGATATTTTGAAAGTAGGTCATCATGGTTCGAAAGGATCAAGTGATCAAAGATTTTTAGACTTCATAAATCCC
AAAATCGCATTTATTTCTGCGGGAAAGAATAATCGTTTTAAGCATCCTCATCAAGAAACATTAGATAGACTCAACGATAA
AAAAATAAAAATCTATAGAACAGATCAACAAGGAGCTATTAGATTATACGGAAATCAAACTTGGCAGATAGAAACAGTTA
GATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5KDJ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC/celB Streptococcus mitis NCTC 12261

58.647

99.254

0.582
  comEC/celB Streptococcus mitis SK321

58.209

100

0.582
  comEC/celB Streptococcus pneumoniae TIGR4

55.303

98.507

0.545
  comEC Lactococcus lactis subsp. cremoris KW2

54.074

100

0.545
  comEC/celB Streptococcus pneumoniae R6

54.545

98.507

0.537
  comEC/celB Streptococcus pneumoniae Rx1

54.545

98.507

0.537
  comEC/celB Streptococcus pneumoniae D39

54.545

98.507

0.537
  comEC Latilactobacillus sakei subsp. sakei 23K

43.609

99.254

0.433
  comEC Bacillus subtilis subsp. subtilis str. 168

49.524

78.358

0.388
  comEC Legionella pneumophila strain ERS1305867

44.954

81.343

0.366
  comEC Legionella pneumophila strain Lp02

44.954

81.343

0.366

Multiple sequence alignment