Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   EL233_RS15860 Genome accession   NZ_LR134319
Coordinates   3397232..3398449 (-) Length   405 a.a.
NCBI ID   WP_126526818.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain NCTC10450     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3392232..3403449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL233_RS15825 (NCTC10450_03188) rpsI 3392380..3392772 (-) 393 WP_013981948.1 30S ribosomal protein S9 -
  EL233_RS15830 (NCTC10450_03189) rplM 3392788..3393216 (-) 429 WP_003287302.1 50S ribosomal protein L13 -
  EL233_RS15835 (NCTC10450_03190) - 3393636..3394676 (+) 1041 WP_013981947.1 NADP(H)-dependent aldo-keto reductase -
  EL233_RS15840 (NCTC10450_03191) - 3394733..3395413 (+) 681 WP_013981946.1 energy-coupling factor ABC transporter permease -
  EL233_RS15845 (NCTC10450_03192) yacG 3395426..3395623 (-) 198 WP_041771656.1 DNA gyrase inhibitor YacG -
  EL233_RS15850 (NCTC10450_03193) coaE 3395620..3396228 (-) 609 WP_014595960.1 dephospho-CoA kinase -
  EL233_RS15855 (NCTC10450_03194) pilD 3396360..3397229 (-) 870 WP_126526817.1 prepilin peptidase Machinery gene
  EL233_RS15860 (NCTC10450_03195) pilC 3397232..3398449 (-) 1218 WP_126526818.1 type II secretion system F family protein Machinery gene
  EL233_RS15865 (NCTC10450_03196) pilB 3398452..3400155 (-) 1704 WP_126526819.1 type IV-A pilus assembly ATPase PilB Machinery gene
  EL233_RS15870 (NCTC10450_03197) pilE 3400476..3400907 (+) 432 WP_126526820.1 pilin Machinery gene
  EL233_RS15875 (NCTC10450_03198) cysN 3401203..3403101 (-) 1899 WP_126526821.1 sulfate adenylyltransferase subunit CysN -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44092.80 Da        Isoelectric Point: 9.8747

>NTDB_id=1121362 EL233_RS15860 WP_126526818.1 3397232..3398449(-) (pilC) [Stutzerimonas stutzeri strain NCTC10450]
MAQKAIRTSVFSWEGTDRKGSKVKGELSGASPALVKAQLRKQGINPQKVRKKSVSLFGAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGALETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAVIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSEALQEWWFIVLAGLIGGAFAFK
EAHKRSEKFRNWFDRLLLKVPIVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRSATMKVKNDVSTGM
QLNFSMRTTGTFPTMAVQMTAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=1121362 EL233_RS15860 WP_126526818.1 3397232..3398449(-) (pilC) [Stutzerimonas stutzeri strain NCTC10450]
ATGGCGCAGAAAGCGATCAGAACCAGTGTGTTCAGCTGGGAGGGAACCGACCGCAAGGGCAGCAAGGTCAAGGGTGAGCT
TAGTGGTGCGAGCCCGGCGCTGGTGAAGGCGCAATTGCGCAAGCAGGGGATCAATCCACAGAAAGTGCGCAAGAAGTCCG
TGTCTCTGTTTGGAGCGGGCAAGAAAATTAAACCCATGGATATCGCGCTGTTCACCCGACAGATGGCGACGATGATGAAA
GCCGGTGTGCCGCTGCTGCAATCCTTCGATATCATCGGTGAGGGTTTCGACAATCCGAACATGCGCAAGCTGGTGGATGA
CCTGAAGCAGGAAGTTGCGGCAGGTAACAGTTTCGCGACGGCTTTGCGCAAGAAGCCACAATACTTCGATGACCTGTATT
GCAACTTGGTCGATTCCGGTGAGCAATCCGGTGCCTTGGAAACCTTGCTCGATCGCGTGGCGACTTACAAGGAAAAGACT
GAGGCATTGAAGGCCAAGATCAAGAAGGCGATGAACTATCCCATTGCGGTAGTCTTGGTGGCGGTCATCGTGTCGGCTAT
TTTGTTGATCAAGGTGGTGCCACAGTTCCAAGAGGTGTTCGCCAACTTCGGGGCCGAGCTTCCGGCTTTTACCTTGATGG
TCATTGGGTTGTCGGAAGCGCTGCAGGAGTGGTGGTTCATTGTTCTGGCGGGGTTGATTGGGGGGGCGTTTGCTTTCAAG
GAGGCACACAAGCGCTCCGAAAAATTTCGCAACTGGTTCGATCGTTTGCTGCTGAAGGTCCCAATTGTCGGTGACATTCT
TTACAAGTCATCCGTCGCCCGCTTTGCCCGCACTCTTTCGACGACTTTTGCTGCGGGTGTGCCGCTGGTGGATGCGCTGG
ATTCGGTGGCTGGGGCTACAGGCAATGTGGTCTTTCGAAGTGCGACGATGAAAGTCAAGAATGATGTGTCCACCGGCATG
CAGCTTAACTTCTCCATGCGCACCACGGGCACGTTCCCTACGATGGCGGTGCAGATGACAGCAATCGGGGAAGAGTCTGG
TTCGCTTGATGAGATGCTGGCCAAGGTTGCGACTTTCTACGAGGACGAAGTCGATAACATGGTTGATGGCCTGACTAGCC
TGATGGAGCCAATGATCATGGCCGTGCTCGGGGTTCTGGTGGGCGGCTTGATTATCGCTATGTACCTTCCGATCTTCCAG
CTAGGTGCTGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

91.111

100

0.911
  pilC Acinetobacter baylyi ADP1

61.425

100

0.617
  pilC Acinetobacter baumannii D1279779

60.494

100

0.605
  pilC Legionella pneumophila strain ERS1305867

52.778

97.778

0.516
  pilG Neisseria gonorrhoeae MS11

45.202

97.778

0.442
  pilG Neisseria meningitidis 44/76-A

45.202

97.778

0.442
  pilC Vibrio cholerae strain A1552

43.434

97.778

0.425
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402

Multiple sequence alignment