Detailed information NTG1121361

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: EL233_RS15855
• Genome accession: NZ_LR134319
• Coordinates: 3396360..3397229 (-)
• Length: 289 a.a.
• NCBI ID: WP_126526817.1
• Uniprot ID: -
• Organism: Stutzerimonas stutzeri strain NCTC10450
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3391360..3402229

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL233_RS15820 (NCTC10450_03187)	petA	3391532..3392125 (-)	594	WP_013981949.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-
EL233_RS15825 (NCTC10450_03188)	rpsI	3392380..3392772 (-)	393	WP_013981948.1	30S ribosomal protein S9	-
EL233_RS15830 (NCTC10450_03189)	rplM	3392788..3393216 (-)	429	WP_003287302.1	50S ribosomal protein L13	-
EL233_RS15835 (NCTC10450_03190)	-	3393636..3394676 (+)	1041	WP_013981947.1	NADP(H)-dependent aldo-keto reductase	-
EL233_RS15840 (NCTC10450_03191)	-	3394733..3395413 (+)	681	WP_013981946.1	energy-coupling factor ABC transporter permease	-
EL233_RS15845 (NCTC10450_03192)	yacG	3395426..3395623 (-)	198	WP_041771656.1	DNA gyrase inhibitor YacG	-
EL233_RS15850 (NCTC10450_03193)	coaE	3395620..3396228 (-)	609	WP_014595960.1	dephospho-CoA kinase	-
EL233_RS15855 (NCTC10450_03194)	pilD	3396360..3397229 (-)	870	WP_126526817.1	prepilin peptidase	Machinery gene
EL233_RS15860 (NCTC10450_03195)	pilC	3397232..3398449 (-)	1218	WP_126526818.1	type II secretion system F family protein	Machinery gene
EL233_RS15865 (NCTC10450_03196)	pilB	3398452..3400155 (-)	1704	WP_126526819.1	type IV-A pilus assembly ATPase PilB	Machinery gene
EL233_RS15870 (NCTC10450_03197)	pilE	3400476..3400907 (+)	432	WP_126526820.1	pilin	Machinery gene

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32104.00 Da
• Isoelectric Point: 7.2176

>NTDB_id=1121361 EL233_RS15855 WP_126526817.1 3396360..3397229(-) (pilD) [Stutzerimonas stutzeri strain NCTC10450]
MGLMDFLASQVLAFVLSAAVLGLLVGSFLNVVIYRVPIMMQREWRMQAREYLDYPPEPFGERFNLLVPSSRCPHCGHRIR
AWENIPLVSWLALRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAGAMLLLTWGLLAMSLIDVDHQLLPDSLV
LPLLWVGLIANSFALFASLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLRVQRAESSTPIPFGPYLAIAGWIALLWGDRITESYLQFARF

Nucleotide

• Length: 870 bp

>NTDB_id=1121361 EL233_RS15855 WP_126526817.1 3396360..3397229(-) (pilD) [Stutzerimonas stutzeri strain NCTC10450]
ATGGGTTTGATGGATTTCTTGGCCAGCCAAGTGCTGGCCTTTGTTTTATCTGCTGCAGTGCTCGGTCTGCTGGTTGGCAG
CTTTCTCAATGTCGTCATCTACCGTGTGCCGATCATGATGCAGCGCGAATGGCGCATGCAGGCGCGGGAATATTTGGATT
ATCCGCCCGAGCCATTTGGGGAGCGTTTCAATCTACTGGTGCCGAGTTCACGCTGCCCTCACTGCGGTCATCGTATCCGT
GCCTGGGAGAACATTCCCTTGGTCAGCTGGCTGGCGCTGCGTGGAAAGTGCTCGTCTTGTCAGGCGCCGATCAGCTGTCG
ATATCCGTTGGTTGAGCTGGCGTGTGGCGTGCTATCCGGATACGTGGCATGGCATTTCGGTTTTTCCTGGCAGGCAGGGG
CGATGCTTCTGCTGACCTGGGGGTTGCTGGCGATGAGCTTGATCGATGTCGATCATCAGTTGCTGCCTGACTCGCTCGTG
CTGCCGCTCTTGTGGGTAGGGTTGATTGCCAACAGCTTTGCTCTGTTCGCCTCTCTCGAGGATGCGCTGTGGGGGGCGAT
AGCCGGTTACCTGAGCCTATGGTCCGTTTATTGGCTGTTCAAGCTGATCACAGGCAAAGAGGGGATGGGCTACGGCGATT
TCAAGCTGCTGGCGATGCTTGGTGCCTGGGGTGGCTGGCAGGTTCTGCCGCTCACTATCTTGCTGTCGTCGGTGGTCGGC
GCCGTGCTTGGCAGTATTCTGCTGAGGGTGCAGCGGGCTGAAAGCAGTACGCCCATTCCGTTCGGGCCGTATCTGGCGAT
AGCGGGGTGGATTGCGTTGCTTTGGGGCGACCGAATTACCGAAAGCTACCTCCAGTTCGCTCGCTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.455	95.156	0.547
pilD	Vibrio campbellii strain DS40M4	57.299	94.81	0.543
pilD	Acinetobacter baumannii D1279779	50	98.27	0.491
pilD	Acinetobacter nosocomialis M2	50	98.27	0.491
pilD	Neisseria gonorrhoeae MS11	53.232	91.003	0.484