Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   EL139_RS07850 Genome accession   NZ_LR134316
Coordinates   1565750..1566076 (+) Length   108 a.a.
NCBI ID   WP_111716789.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1563420..1611895 1565750..1566076 within 0


Gene organization within MGE regions


Location: 1563420..1611895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL139_RS11175 (NCTC6181_01596) - 1563505..1563666 (+) 162 WP_000198163.1 hypothetical protein -
  EL139_RS07835 (NCTC6181_01597) - 1563669..1564748 (+) 1080 WP_111716793.1 replication initiator protein A -
  EL139_RS07840 (NCTC6181_01598) - 1564742..1565431 (+) 690 WP_111716791.1 hypothetical protein -
  EL139_RS07845 - 1565535..1565753 (+) 219 WP_037582094.1 helix-turn-helix transcriptional regulator -
  EL139_RS07850 (NCTC6181_01600) ssbB 1565750..1566076 (+) 327 WP_111716789.1 single-stranded DNA-binding protein Machinery gene
  EL139_RS07855 (NCTC6181_01601) - 1566102..1568447 (+) 2346 WP_111716786.1 C39 family peptidase -
  EL139_RS07860 (NCTC6181_01602) - 1568815..1569120 (+) 306 WP_111716784.1 hypothetical protein -
  EL139_RS07865 (NCTC6181_01603) - 1569126..1569821 (+) 696 WP_111716782.1 LPXTG cell wall anchor domain-containing protein -
  EL139_RS07870 (NCTC6181_01604) - 1569878..1573930 (+) 4053 WP_111716780.1 SspB-related isopeptide-forming adhesin -
  EL139_RS07875 (NCTC6181_01605) - 1574225..1574452 (+) 228 WP_000447008.1 hypothetical protein -
  EL139_RS07880 (NCTC6181_01606) - 1574557..1575126 (+) 570 WP_111716778.1 hypothetical protein -
  EL139_RS07885 (NCTC6181_01607) - 1575177..1575929 (+) 753 WP_111716775.1 hypothetical protein -
  EL139_RS07890 (NCTC6181_01608) - 1575966..1576235 (+) 270 WP_111681577.1 hypothetical protein -
  EL139_RS07895 (NCTC6181_01609) - 1576254..1576712 (+) 459 WP_111681578.1 hypothetical protein -
  EL139_RS07900 (NCTC6181_01610) - 1576696..1577274 (+) 579 WP_111716773.1 hypothetical protein -
  EL139_RS07905 (NCTC6181_01611) - 1577321..1577683 (+) 363 WP_111716771.1 PrgI family protein -
  EL139_RS07910 (NCTC6181_01612) - 1577661..1580009 (+) 2349 WP_111716769.1 DUF87 domain-containing protein -
  EL139_RS07915 (NCTC6181_01613) - 1580049..1582745 (+) 2697 WP_111716767.1 phage tail tip lysozyme -
  EL139_RS07920 (NCTC6181_01614) - 1582769..1583371 (+) 603 WP_111716765.1 hypothetical protein -
  EL139_RS07925 (NCTC6181_01615) - 1583394..1583666 (+) 273 WP_111716763.1 hypothetical protein -
  EL139_RS07930 (NCTC6181_01616) - 1583666..1584448 (+) 783 WP_111716761.1 hypothetical protein -
  EL139_RS07935 (NCTC6181_01617) - 1584470..1584961 (+) 492 WP_111681586.1 DUF3801 domain-containing protein -
  EL139_RS07940 (NCTC6181_01618) - 1584961..1587006 (+) 2046 WP_111716759.1 type IV secretory system conjugative DNA transfer family protein -
  EL139_RS07945 (NCTC6181_01619) - 1587045..1590281 (+) 3237 WP_111716757.1 PBECR4 domain-containing protein -
  EL139_RS07950 (NCTC6181_01620) - 1590333..1590632 (+) 300 WP_111716755.1 hypothetical protein -
  EL139_RS07960 (NCTC6181_01621) - 1590964..1591524 (+) 561 WP_111716752.1 hypothetical protein -
  EL139_RS07965 (NCTC6181_01622) mobC 1591527..1591910 (+) 384 WP_111716750.1 plasmid mobilization relaxosome protein MobC -
  EL139_RS07970 (NCTC6181_01623) - 1591873..1593513 (+) 1641 WP_111716747.1 relaxase/mobilization nuclease domain-containing protein -
  EL139_RS07975 (NCTC6181_01624) - 1593545..1593742 (+) 198 WP_111716745.1 hypothetical protein -
  EL139_RS07980 (NCTC6181_01625) - 1593829..1594050 (+) 222 WP_164401744.1 helical hairpin domain-containing protein -
  EL139_RS07985 (NCTC6181_01626) - 1594065..1594664 (+) 600 WP_111716741.1 hypothetical protein -
  EL139_RS07990 (NCTC6181_01627) - 1594762..1595169 (+) 408 WP_111716739.1 hypothetical protein -
  EL139_RS07995 (NCTC6181_01628) - 1595200..1596483 (+) 1284 WP_111716737.1 ISLre2 family transposase -
  EL139_RS08000 (NCTC6181_01630) - 1596822..1597955 (-) 1134 WP_111714946.1 ISAs1 family transposase -
  EL139_RS08005 (NCTC6181_01631) trpX 1598444..1599439 (+) 996 WP_111716732.1 tryptophan ABC transporter substrate-binding protein -
  EL139_RS08010 (NCTC6181_01632) - 1599457..1600326 (+) 870 WP_111716730.1 ABC transporter permease -
  EL139_RS08015 (NCTC6181_01633) - 1600323..1601081 (+) 759 WP_111716728.1 ABC transporter ATP-binding protein -
  EL139_RS08020 (NCTC6181_01634) - 1601294..1602955 (+) 1662 WP_003056218.1 ribonuclease J -
  EL139_RS08025 (NCTC6181_01635) - 1603049..1603834 (+) 786 WP_111716725.1 alpha/beta hydrolase family protein -
  EL139_RS08030 (NCTC6181_01636) - 1603864..1604157 (+) 294 WP_111716724.1 hypothetical protein -
  EL139_RS08035 (NCTC6181_01637) - 1604235..1606142 (+) 1908 WP_111716723.1 ABC-F family ATP-binding cassette domain-containing protein -
  EL139_RS08040 (NCTC6181_01638) - 1606427..1607395 (+) 969 WP_037584959.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -
  EL139_RS08045 (NCTC6181_01639) - 1607454..1608452 (+) 999 WP_003051182.1 alpha-ketoacid dehydrogenase subunit beta -
  EL139_RS08050 (NCTC6181_01640) - 1608684..1610093 (+) 1410 WP_111716721.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12242.96 Da        Isoelectric Point: 10.0095

>NTDB_id=1121236 EL139_RS07850 WP_111716789.1 1565750..1566076(+) (ssbB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
MNNTNLIGRLTKKAELYQTPDKKTYARFTIAINRKKKAGGSGSEADFIPCIIWGKGAENLISWTDKGTLISLEGELRTRN
YEKDGQKHFVMEVWSTFFQVLSKPANDN

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1121236 EL139_RS07850 WP_111716789.1 1565750..1566076(+) (ssbB) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
ATGAATAATACAAACTTAATTGGTCGTCTGACTAAAAAGGCTGAGCTATATCAAACGCCAGATAAGAAGACCTATGCCCG
ATTTACAATAGCGATTAATCGGAAAAAGAAAGCAGGTGGGTCAGGAAGTGAGGCCGATTTCATTCCCTGCATCATCTGGG
GGAAGGGAGCTGAAAATCTTATCAGTTGGACCGACAAAGGAACACTCATCAGTCTAGAGGGAGAACTACGAACTCGCAAT
TATGAAAAAGATGGGCAAAAGCACTTTGTCATGGAGGTTTGGTCAACCTTTTTCCAAGTCTTATCAAAGCCAGCTAATGA
CAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

49.057

98.148

0.481
  ssbB/cilA Streptococcus pneumoniae TIGR4

50

96.296

0.481
  ssbB/cilA Streptococcus mitis NCTC 12261

50

96.296

0.481
  ssbB/cilA Streptococcus mitis SK321

50

96.296

0.481
  ssbB/cilA Streptococcus pneumoniae D39

49.038

96.296

0.472
  ssbB/cilA Streptococcus pneumoniae R6

49.038

96.296

0.472
  ssbB/cilA Streptococcus pneumoniae Rx1

49.038

96.296

0.472
  ssbA Streptococcus mutans UA159

47.619

97.222

0.463
  ssbB Streptococcus sobrinus strain NIDR 6715-7

46.667

97.222

0.454
  ssbA Bacillus subtilis subsp. subtilis str. 168

43.925

99.074

0.435
  ssb Latilactobacillus sakei subsp. sakei 23K

41.176

94.444

0.389

Multiple sequence alignment