Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL139_RS02580 Genome accession   NZ_LR134316
Coordinates   481836..482231 (-) Length   131 a.a.
NCBI ID   WP_111714809.1    Uniprot ID   A0A9X7SC97
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 476836..487231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL139_RS02560 (NCTC6181_00524) - 477342..478145 (-) 804 WP_111714819.1 ABC transporter ATP-binding protein -
  EL139_RS02565 (NCTC6181_00525) - 478154..479038 (-) 885 WP_111714817.1 ABC transporter permease -
  EL139_RS02570 (NCTC6181_00526) - 479456..480334 (-) 879 WP_111714814.1 ABC transporter substrate-binding protein -
  EL139_RS02575 (NCTC6181_00527) - 480364..481326 (-) 963 WP_111714811.1 ABC transporter substrate-binding protein -
  EL139_RS02580 (NCTC6181_00528) ssbA 481836..482231 (-) 396 WP_111714809.1 single-stranded DNA-binding protein Machinery gene
  EL139_RS02585 (NCTC6181_00529) - 482310..483038 (+) 729 WP_111714806.1 class I SAM-dependent methyltransferase -
  EL139_RS02590 (NCTC6181_00530) ytpR 483179..483805 (-) 627 WP_111714803.1 YtpR family tRNA-binding protein -
  EL139_RS02595 (NCTC6181_00531) - 483824..484141 (-) 318 WP_111714801.1 thioredoxin family protein -
  EL139_RS11275 - 484138..484281 (-) 144 WP_343233265.1 DUF4651 domain-containing protein -
  EL139_RS11280 - 484254..484421 (-) 168 WP_231871991.1 hypothetical protein -
  EL139_RS02610 (NCTC6181_00532) pepA 484979..486046 (+) 1068 WP_111714798.1 glutamyl aminopeptidase -
  EL139_RS02615 (NCTC6181_00533) proC 486093..486869 (+) 777 WP_111714795.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14799.97 Da        Isoelectric Point: 7.1671

>NTDB_id=1121205 EL139_RS02580 WP_111714809.1 481836..482231(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVANDLVDLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1121205 EL139_RS02580 WP_111714809.1 481836..482231(-) (ssbA) [Streptococcus dysgalactiae subsp. equisimilis strain NCTC6181]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTGGCCAAACCAGAATTGGTAAAAACCGCTACAGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCGGGAGAGCGAGAAGCAGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCAGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGACGGTGAACTTAGAACCCGT
AAATATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTGCTATGCCAGTCTTTTCAGTTATTAGAAAGTCGTGCTCA
GCGTGCGATGCGAGAAAATAATGTCGCCAATGACTTGGTAGATTTGGTTCTAGAAGAGGAGGAGTTGCCTTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

74.809

100

0.748
  ssbB/cilA Streptococcus pneumoniae D39

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae R6

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae TIGR4

71.756

100

0.718
  ssbB/cilA Streptococcus mitis NCTC 12261

71.756

100

0.718
  ssbB/cilA Streptococcus pneumoniae Rx1

71.756

100

0.718
  ssbB/cilA Streptococcus mitis SK321

70.992

100

0.71
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.154

89.313

0.412
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment