Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL107_RS07110 Genome accession   NZ_LR134314
Coordinates   1415536..1415931 (-) Length   131 a.a.
NCBI ID   WP_003053955.1    Uniprot ID   A0AAE9R0G1
Organism   Streptococcus pyogenes strain NCTC8302     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1410536..1420931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL107_RS07090 (NCTC8302_01405) rofA 1411139..1412632 (+) 1494 WP_047149466.1 transcriptional regulator RofA -
  EL107_RS07095 (NCTC8302_01406) hslO 1412779..1413651 (+) 873 WP_011184098.1 Hsp33 family molecular chaperone HslO -
  EL107_RS07100 (NCTC8302_01407) dusB 1413638..1414615 (+) 978 WP_023078306.1 tRNA dihydrouridine synthase DusB -
  EL107_RS07105 (NCTC8302_01408) - 1414635..1415276 (+) 642 WP_002986504.1 deoxynucleoside kinase -
  EL107_RS07110 (NCTC8302_01409) ssbA 1415536..1415931 (-) 396 WP_003053955.1 single-stranded DNA-binding protein Machinery gene
  EL107_RS07115 (NCTC8302_01410) ytpR 1416083..1416709 (-) 627 WP_002986511.1 YtpR family tRNA-binding protein -
  EL107_RS07120 (NCTC8302_01411) - 1416727..1417044 (-) 318 WP_002986515.1 thioredoxin family protein -
  EL107_RS07125 (NCTC8302_01412) - 1417041..1417325 (-) 285 WP_011888537.1 DUF4651 domain-containing protein -
  EL107_RS07135 (NCTC8302_01413) pepA 1417790..1418857 (+) 1068 WP_011184093.1 glutamyl aminopeptidase -
  EL107_RS07140 (NCTC8302_01414) proC 1418905..1419675 (+) 771 WP_011184092.1 pyrroline-5-carboxylate reductase -
  EL107_RS07145 - 1419758..1420066 (-) 309 WP_011017251.1 hypothetical protein -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14787.96 Da        Isoelectric Point: 8.0157

>NTDB_id=1121147 EL107_RS07110 WP_003053955.1 1415536..1415931(-) (ssbA) [Streptococcus pyogenes strain NCTC8302]
MYNKVIAIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVTNDLVDLVLEEDTLPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1121147 EL107_RS07110 WP_003053955.1 1415536..1415931(-) (ssbA) [Streptococcus pyogenes strain NCTC8302]
ATGTATAATAAAGTGATAGCAATCGGTCGTTTGGTAGCTAAACCAGAATTGGTAAAAACAGCTACGGATAAGCATGTAGC
ACGTCTCTCTTTAGCTGTTAATCGAAGATTTAAAAATGCTTCTGGAGAGCGAGAAGCGGATTTTATCTCTGTTGTTGTTT
GGGGAAAGTTAGCTGAAACCTTGGTTTCTTATGCTAGCAAAGGTAGTTTGATGTCTATTGATGGCGAACTTAGGACCCGC
AAGTATGATAAAGATGGGCAAGTGCATTATGTGACAGAAGTTCTCTGCCAATCATTTCAACTGCTTGAAAGTCGTGCTCA
GCGTGCTATGAGAGAAAATAATGTTACTAATGATCTAGTTGATTTAGTCTTAGAAGAAGATACTCTTCCCTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

74.046

100

0.74
  ssbB Streptococcus sobrinus strain NIDR 6715-7

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae D39

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae R6

70.229

100

0.702
  ssbB/cilA Streptococcus mitis NCTC 12261

70.229

100

0.702
  ssbB/cilA Streptococcus pneumoniae TIGR4

70.229

100

0.702
  ssbB/cilA Streptococcus mitis SK321

69.466

100

0.695
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssb Latilactobacillus sakei subsp. sakei 23K

46.903

86.26

0.405
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.057

80.916

0.397

Multiple sequence alignment