Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL119_RS08750 Genome accession   NZ_LR134305
Coordinates   1667324..1667752 (-) Length   142 a.a.
NCBI ID   WP_045178958.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NCTC1803     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1662324..1672752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL119_RS08695 (NCTC1803_01648) - 1662363..1662611 (-) 249 WP_001124144.1 phi PVL orf 51-like protein -
  EL119_RS08700 (NCTC1803_01649) - 1662612..1662983 (-) 372 WP_001140276.1 SA1788 family PVL leukocidin-associated protein -
  EL119_RS08705 (NCTC1803_01650) - 1662984..1663252 (-) 269 Protein_1613 helix-turn-helix domain-containing protein -
  EL119_RS08710 (NCTC1803_01651) - 1663253..1663438 (-) 186 WP_065315894.1 DUF3113 family protein -
  EL119_RS08715 (NCTC1803_01652) - 1663443..1663847 (-) 405 WP_000049813.1 DUF1064 domain-containing protein -
  EL119_RS08720 (NCTC1803_01653) - 1663858..1664079 (-) 222 WP_001123688.1 DUF3269 family protein -
  EL119_RS08725 (NCTC1803_01654) - 1664082..1664297 (-) 216 WP_001024404.1 hypothetical protein -
  EL119_RS08730 (NCTC1803_01655) - 1664294..1665535 (-) 1242 WP_126498395.1 DnaB helicase C-terminal domain-containing protein -
  EL119_RS08735 (NCTC1803_01656) - 1665532..1665888 (-) 357 WP_001132243.1 hypothetical protein -
  EL119_RS08740 (NCTC1803_01657) - 1665888..1666643 (-) 756 WP_001037656.1 DnaD domain protein -
  EL119_RS08745 (NCTC1803_01658) - 1666636..1667310 (-) 675 WP_065315820.1 putative HNHc nuclease -
  EL119_RS08750 (NCTC1803_01659) ssbA 1667324..1667752 (-) 429 WP_045178958.1 single-stranded DNA-binding protein Machinery gene
  EL119_RS08755 (NCTC1803_01660) - 1667752..1668390 (-) 639 WP_001043063.1 ERF family protein -
  EL119_RS08760 (NCTC1803_01661) - 1668390..1668869 (-) 480 WP_000002517.1 siphovirus Gp157 family protein -
  EL119_RS08765 (NCTC1803_01662) - 1668884..1669144 (-) 261 WP_000291093.1 DUF1108 family protein -
  EL119_RS08770 (NCTC1803_01663) - 1669239..1669400 (-) 162 WP_065315819.1 DUF1270 domain-containing protein -
  EL119_RS08775 (NCTC1803_01664) - 1669384..1669614 (-) 231 WP_065315818.1 hypothetical protein -
  EL119_RS08780 (NCTC1803_01665) - 1669685..1669897 (+) 213 WP_000461464.1 hypothetical protein -
  EL119_RS14830 - 1669912..1669989 (-) 78 Protein_1629 hypothetical protein -
  EL119_RS08785 (NCTC1803_01667) - 1670005..1670754 (-) 750 WP_065316555.1 phage antirepressor KilAC domain-containing protein -
  EL119_RS08790 (NCTC1803_01668) - 1670815..1671057 (+) 243 WP_000498529.1 hypothetical protein -
  EL119_RS08795 (NCTC1803_01669) - 1671005..1671292 (-) 288 WP_065316727.1 hypothetical protein -
  EL119_RS08800 (NCTC1803_01670) - 1671347..1671556 (+) 210 WP_000772137.1 hypothetical protein -
  EL119_RS08805 (NCTC1803_01671) - 1671549..1671689 (-) 141 WP_000939495.1 hypothetical protein -
  EL119_RS08810 (NCTC1803_01672) - 1671704..1672147 (-) 444 WP_065316411.1 hypothetical protein -
  EL119_RS08815 (NCTC1803_01673) - 1672195..1672407 (-) 213 WP_000213811.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16020.59 Da        Isoelectric Point: 5.8724

>NTDB_id=1120831 EL119_RS08750 WP_045178958.1 1667324..1667752(-) (ssbA) [Staphylococcus aureus strain NCTC1803]
MLNRTVLVGRLTKDPEYRTTPDGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1120831 EL119_RS08750 WP_045178958.1 1667324..1667752(-) (ssbA) [Staphylococcus aureus strain NCTC1803]
ATGCTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGGATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.613
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.958

100

0.423
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

39.437

100

0.394
  ssbB/cilA Streptococcus mitis SK321

39.437

100

0.394

Multiple sequence alignment