Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | EL097_RS02035 | Genome accession | NZ_LR134293 |
| Coordinates | 419717..420112 (-) | Length | 131 a.a. |
| NCBI ID | WP_003046216.1 | Uniprot ID | A0A2D4DQK2 |
| Organism | Streptococcus canis strain NCTC12191 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 418619..419092 | 419717..420112 | flank | 625 |
Gene organization within MGE regions
Location: 418619..420112
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| EL097_RS02030 (NCTC12191_00394) | tnpA | 418619..419092 (-) | 474 | WP_003046218.1 | IS200/IS605 family transposase | - |
| EL097_RS02035 (NCTC12191_00395) | ssbB | 419717..420112 (-) | 396 | WP_003046216.1 | single-stranded DNA-binding protein | Machinery gene |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14819.03 Da Isoelectric Point: 7.1668
>NTDB_id=1120486 EL097_RS02035 WP_003046216.1 419717..420112(-) (ssbB) [Streptococcus canis strain NCTC12191]
MYNKVIMIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVASDLVDLVLEEEDLPF
MYNKVIMIGRLVAKPELVKTATDKHVARLSLAVNRRFKNASGEREADFISVVVWGKLAETLVSYASKGSLMSIDGELRTR
KYDKDGQVHYVTEVLCQSFQLLESRAQRAMRENNVASDLVDLVLEEEDLPF
Nucleotide
Download Length: 396 bp
>NTDB_id=1120486 EL097_RS02035 WP_003046216.1 419717..420112(-) (ssbB) [Streptococcus canis strain NCTC12191]
ATGTATAATAAAGTAATCATGATTGGTCGTTTGGTGGCTAAACCTGAATTGGTAAAAACAGCTACGGATAAGCATGTGGC
GCGTCTATCTTTGGCTGTTAATCGGAGGTTCAAGAATGCTTCAGGAGAGCGAGAAGCTGATTTTATTTCTGTTGTTGTCT
GGGGAAAGTTGGCAGAAACTCTGGTTTCTTATGCCAGTAAAGGTAGTTTGATGTCTATTGATGGCGAGCTTAGAACCCGC
AAATATGATAAAGATGGGCAAGTGCATTATGTGACGGAAGTGCTATGTCAGTCCTTTCAGTTATTAGAAAGTCGTGCTCA
GCGTGCAATGCGAGAAAATAATGTGGCCAGTGACTTGGTGGATTTGGTCTTGGAAGAGGAGGACTTGCCTTTTTAA
ATGTATAATAAAGTAATCATGATTGGTCGTTTGGTGGCTAAACCTGAATTGGTAAAAACAGCTACGGATAAGCATGTGGC
GCGTCTATCTTTGGCTGTTAATCGGAGGTTCAAGAATGCTTCAGGAGAGCGAGAAGCTGATTTTATTTCTGTTGTTGTCT
GGGGAAAGTTGGCAGAAACTCTGGTTTCTTATGCCAGTAAAGGTAGTTTGATGTCTATTGATGGCGAGCTTAGAACCCGC
AAATATGATAAAGATGGGCAAGTGCATTATGTGACGGAAGTGCTATGTCAGTCCTTTCAGTTATTAGAAAGTCGTGCTCA
GCGTGCAATGCGAGAAAATAATGTGGCCAGTGACTTGGTGGATTTGGTCTTGGAAGAGGAGGACTTGCCTTTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
74.809 |
100 |
0.748 |
| ssbA | Streptococcus mutans UA159 |
74.046 |
100 |
0.74 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
71.756 |
100 |
0.718 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
71.756 |
100 |
0.718 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
71.756 |
100 |
0.718 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
71.756 |
100 |
0.718 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
70.992 |
100 |
0.71 |
| ssbB/cilA | Streptococcus mitis SK321 |
70.229 |
100 |
0.702 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
61.207 |
88.55 |
0.542 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.61 |
90.076 |
0.42 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.057 |
80.916 |
0.397 |