Detailed information NTG1120459

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: EL084_RS07240
• Genome accession: NZ_LR134292
• Coordinates: 1440582..1440977 (+)
• Length: 131 a.a.
• NCBI ID: WP_126439871.1
• Uniprot ID: -
• Organism: Streptococcus equinus strain NCTC10389
• Function: ssDNA binding (predicted from homology) DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
ICE	1435829..1444975	1440582..1440977	within	0

Gene organization within MGE regions

Location: 1435829..1444975

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL084_RS07200 (NCTC10389_01526)	-	1435829..1436026 (+)	198	WP_126439868.1	helix-turn-helix transcriptional regulator	-
EL084_RS07210 (NCTC10389_01527)	-	1436545..1437180 (+)	636	WP_126439869.1	CPBP family intramembrane glutamic endopeptidase	-
EL084_RS07215 (NCTC10389_01528)	proC	1437231..1438001 (-)	771	WP_126439870.1	pyrroline-5-carboxylate reductase	-
EL084_RS07220 (NCTC10389_01529)	pepA	1438062..1439129 (-)	1068	WP_044023484.1	glutamyl aminopeptidase	-
EL084_RS07225 (NCTC10389_01530)	-	1439246..1439539 (+)	294	WP_044023483.1	DUF4651 domain-containing protein	-
EL084_RS07230 (NCTC10389_01531)	-	1439532..1439849 (+)	318	WP_021141448.1	thioredoxin family protein	-
EL084_RS07235 (NCTC10389_01532)	ytpR	1439858..1440484 (+)	627	WP_003067880.1	YtpR family tRNA-binding protein	-
EL084_RS07240 (NCTC10389_01533)	ssbA	1440582..1440977 (+)	396	WP_126439871.1	single-stranded DNA-binding protein	Machinery gene
EL084_RS07245 (NCTC10389_01534)	-	1441126..1442169 (+)	1044	WP_126440608.1	YeeE/YedE family protein	-
EL084_RS07250 (NCTC10389_01535)	-	1442172..1442399 (+)	228	WP_126439872.1	sulfurtransferase TusA family protein	-
EL084_RS07255 (NCTC10389_01536)	-	1442526..1443326 (+)	801	WP_126439873.1	Cof-type HAD-IIB family hydrolase	-
EL084_RS07260 (NCTC10389_01537)	-	1443525..1444040 (+)	516	WP_232007656.1	KxYKxGKxW signal peptide domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14847.88 Da
• Isoelectric Point: 6.4774

>NTDB_id=1120459 EL084_RS07240 WP_126439871.1 1440582..1440977(+) (ssbA) [Streptococcus equinus strain NCTC10389]
MYNKVIMIGRLTAQPELVTTANDKSVTRVTLAVNRRFKSKNGEREADFISLVVWGRLAETLVSYAGKGSLLSVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=1120459 EL084_RS07240 WP_126439871.1 1440582..1440977(+) (ssbA) [Streptococcus equinus strain NCTC10389]
ATGTACAATAAAGTAATTATGATTGGGCGCTTGACAGCGCAACCTGAACTTGTAACGACAGCTAACGATAAAAGTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCGAAAAATGGTGAGCGTGAGGCTGACTTCATTTCGCTTGTGGTAT
GGGGACGTTTGGCAGAAACACTTGTGTCTTATGCAGGAAAAGGCAGCTTACTTTCTGTTGATGGCGAACTTCGCACACGC
AAGTACGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGTCATTCTTTCCAACTTTTAGAAAGCCGCGCCCA
ACGTGCTATGCGAGAAAATAATGTGGCAAATGATTTGGCAGATTTAGTTCTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	79.389	100	0.794
ssbB/cilA	Streptococcus pneumoniae R6	77.863	100	0.779
ssbB/cilA	Streptococcus pneumoniae Rx1	77.863	100	0.779
ssbB/cilA	Streptococcus pneumoniae D39	77.863	100	0.779
ssbB/cilA	Streptococcus pneumoniae TIGR4	77.099	100	0.771
ssbB/cilA	Streptococcus mitis NCTC 12261	76.336	100	0.763
ssbB/cilA	Streptococcus mitis SK321	76.336	100	0.763
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.756
ssbB	Lactococcus lactis subsp. cremoris KW2	62.281	87.023	0.542
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	45.299	89.313	0.405