Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   EL084_RS00230 Genome accession   NZ_LR134292
Coordinates   35326..35721 (+) Length   131 a.a.
NCBI ID   WP_126439871.1    Uniprot ID   -
Organism   Streptococcus equinus strain NCTC10389     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 30574..48802 35326..35721 within 0


Gene organization within MGE regions


Location: 30574..48802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL084_RS00190 (NCTC10389_00041) - 30574..30771 (+) 198 WP_126439868.1 helix-turn-helix transcriptional regulator -
  EL084_RS00200 (NCTC10389_00042) - 31290..31925 (+) 636 WP_126439869.1 CPBP family intramembrane glutamic endopeptidase -
  EL084_RS00205 (NCTC10389_00043) proC 31976..32746 (-) 771 WP_126439870.1 pyrroline-5-carboxylate reductase -
  EL084_RS00210 (NCTC10389_00044) pepA 32807..33874 (-) 1068 WP_044023484.1 glutamyl aminopeptidase -
  EL084_RS00215 (NCTC10389_00045) - 33991..34284 (+) 294 WP_044023483.1 DUF4651 domain-containing protein -
  EL084_RS00220 (NCTC10389_00046) - 34277..34594 (+) 318 WP_021141448.1 thioredoxin family protein -
  EL084_RS00225 ytpR 34646..35228 (+) 583 Protein_25 YtpR family tRNA-binding protein -
  EL084_RS00230 (NCTC10389_00049) ssbA 35326..35721 (+) 396 WP_126439871.1 single-stranded DNA-binding protein Machinery gene
  EL084_RS09470 - 35869..36907 (+) 1039 Protein_27 YeeE/YedE thiosulfate transporter family protein -
  EL084_RS00240 (NCTC10389_00053) - 36910..37137 (+) 228 WP_126439872.1 sulfurtransferase TusA family protein -
  EL084_RS00245 (NCTC10389_00054) - 37264..38064 (+) 801 WP_126439873.1 Cof-type HAD-IIB family hydrolase -
  EL084_RS00250 (NCTC10389_00055) - 38263..38769 (+) 507 WP_232007672.1 KxYKxGKxW signal peptide domain-containing protein -
  EL084_RS09475 - 38798..38881 (+) 84 Protein_31 helix-turn-helix domain-containing protein -
  EL084_RS00255 (NCTC10389_00056) groES 39024..39308 (+) 285 WP_003067847.1 co-chaperone GroES -
  EL084_RS00260 (NCTC10389_00057) groL 39359..40987 (+) 1629 WP_003067845.1 chaperonin GroEL -
  EL084_RS00265 - 41127..41980 (+) 854 Protein_34 helix-turn-helix domain-containing protein -
  EL084_RS00270 (NCTC10389_00060) - 42882..43166 (+) 285 WP_126439874.1 hypothetical protein -
  EL084_RS00275 (NCTC10389_00061) - 43500..45104 (+) 1605 WP_126439875.1 zinc ribbon domain-containing protein -
  EL084_RS00280 (NCTC10389_00062) - 45223..46083 (-) 861 WP_126439876.1 RluA family pseudouridine synthase -
  EL084_RS00285 (NCTC10389_00063) - 46134..46337 (-) 204 WP_003067830.1 hypothetical protein -
  EL084_RS00290 (NCTC10389_00064) pbp2a 46496..48802 (+) 2307 WP_126439877.1 penicillin-binding protein PBP2A -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14847.88 Da        Isoelectric Point: 6.4774

>NTDB_id=1120418 EL084_RS00230 WP_126439871.1 35326..35721(+) (ssbA) [Streptococcus equinus strain NCTC10389]
MYNKVIMIGRLTAQPELVTTANDKSVTRVTLAVNRRFKSKNGEREADFISLVVWGRLAETLVSYAGKGSLLSVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1120418 EL084_RS00230 WP_126439871.1 35326..35721(+) (ssbA) [Streptococcus equinus strain NCTC10389]
ATGTACAATAAAGTAATTATGATTGGGCGCTTGACAGCGCAACCTGAACTTGTAACGACAGCTAACGATAAAAGTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCGAAAAATGGTGAGCGTGAGGCTGACTTCATTTCGCTTGTGGTAT
GGGGACGTTTGGCAGAAACACTTGTGTCTTATGCAGGAAAAGGCAGCTTACTTTCTGTTGATGGCGAACTTCGCACACGC
AAGTACGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGTCATTCTTTCCAACTTTTAGAAAGCCGCGCCCA
ACGTGCTATGCGAGAAAATAATGTGGCAAATGATTTGGCAGATTTAGTTCTGGAAGAGGAGGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB/cilA Streptococcus pneumoniae R6

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae Rx1

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae D39

77.863

100

0.779
  ssbB/cilA Streptococcus pneumoniae TIGR4

77.099

100

0.771
  ssbB/cilA Streptococcus mitis NCTC 12261

76.336

100

0.763
  ssbB/cilA Streptococcus mitis SK321

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405

Multiple sequence alignment