Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYC   Type   Machinery gene
Locus tag   EL092_RS09585 Genome accession   NZ_LR134291
Coordinates   1990265..1990582 (-) Length   105 a.a.
NCBI ID   WP_012130940.1    Uniprot ID   -
Organism   Streptococcus gordonii strain NCTC7868     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1985265..1995582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL092_RS09550 (NCTC7868_01909) - 1985842..1986507 (-) 666 WP_012130933.1 CPBP family intramembrane glutamic endopeptidase -
  EL092_RS09555 (NCTC7868_01910) - 1986555..1987745 (-) 1191 WP_012130934.1 acetate kinase -
  EL092_RS09560 (NCTC7868_01911) comYH 1987795..1988748 (-) 954 WP_012130935.1 class I SAM-dependent methyltransferase Machinery gene
  EL092_RS09565 (NCTC7868_01912) comGG 1988779..1989210 (-) 432 WP_223341947.1 competence type IV pilus minor pilin ComGG -
  EL092_RS09570 (NCTC7868_01913) comGF/cglF 1989191..1989628 (-) 438 WP_012130937.1 competence type IV pilus minor pilin ComGF Machinery gene
  EL092_RS09575 (NCTC7868_01914) comGE/cglE 1989612..1989905 (-) 294 WP_012130938.1 competence type IV pilus minor pilin ComGE Machinery gene
  EL092_RS09580 (NCTC7868_01915) comYD 1989877..1990305 (-) 429 WP_012130939.1 competence type IV pilus minor pilin ComGD Machinery gene
  EL092_RS09585 (NCTC7868_01916) comYC 1990265..1990582 (-) 318 WP_012130940.1 competence type IV pilus major pilin ComGC Machinery gene
  EL092_RS09590 (NCTC7868_01917) comYB 1990579..1991613 (-) 1035 WP_012130941.1 competence type IV pilus assembly protein ComGB Machinery gene
  EL092_RS09595 (NCTC7868_01918) comYA 1991525..1992484 (-) 960 WP_012130942.1 competence type IV pilus ATPase ComGA Machinery gene
  EL092_RS09600 (NCTC7868_01919) - 1992586..1992954 (-) 369 WP_012130943.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11461.38 Da        Isoelectric Point: 9.9223

>NTDB_id=1120392 EL092_RS09585 WP_012130940.1 1990265..1990582(-) (comYC) [Streptococcus gordonii strain NCTC7868]
MNKLKKLRVKAFTLVEMLVVLLIISVLMLLFVPNLTKQKEAVSDTGNAAVVKVVESQAELYELKNTGDQATLSKLVAAGN
ISQKQADSYKAYYGKNNSETQAVAN

Nucleotide


Download         Length: 318 bp        

>NTDB_id=1120392 EL092_RS09585 WP_012130940.1 1990265..1990582(-) (comYC) [Streptococcus gordonii strain NCTC7868]
ATGAACAAATTAAAAAAATTACGTGTGAAAGCTTTTACTTTAGTGGAAATGCTAGTTGTCCTTCTGATCATCAGTGTCCT
TATGCTCTTATTTGTCCCTAATTTAACCAAGCAAAAAGAGGCAGTTTCGGATACTGGAAATGCTGCGGTGGTTAAGGTAG
TTGAGAGCCAGGCTGAGCTCTATGAACTCAAAAATACAGGAGATCAAGCAACCCTCAGCAAATTAGTCGCAGCTGGGAAC
ATTAGTCAAAAGCAAGCAGACTCTTACAAGGCTTATTATGGTAAGAACAATAGTGAGACTCAGGCAGTTGCCAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYC Streptococcus gordonii str. Challis substr. CH1

100

100

1
  comYC Streptococcus mutans UA140

71.429

100

0.714
  comYC Streptococcus mutans UA159

71.429

100

0.714
  comGC/cglC Streptococcus mitis NCTC 12261

69.524

100

0.695
  comGC/cglC Streptococcus mitis SK321

68.932

98.095

0.676
  comGC/cglC Streptococcus pneumoniae Rx1

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae D39

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae TIGR4

67.961

98.095

0.667
  comGC/cglC Streptococcus pneumoniae R6

67.961

98.095

0.667
  comGC Lactococcus lactis subsp. cremoris KW2

59.794

92.381

0.552
  comYC Streptococcus suis isolate S10

61.798

84.762

0.524

Multiple sequence alignment