Detailed information NTG1119912

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: EL076_RS09045
• Genome accession: NZ_LR134275
• Coordinates: 1794139..1794531 (-)
• Length: 130 a.a.
• NCBI ID: WP_003092010.1
• Uniprot ID: -
• Organism: Streptococcus vestibularis strain NCTC12167
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1789139..1799531

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EL076_RS09005 (NCTC12167_01776)	dapD	1789332..1790030 (-)	699	WP_037621250.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-
EL076_RS09010 (NCTC12167_01777)	-	1790116..1790868 (-)	753	Protein_1692	HAD family hydrolase	-
EL076_RS09015 (NCTC12167_01778)	-	1790981..1791820 (-)	840	WP_126430073.1	methyltransferase domain-containing protein	-
EL076_RS09025 (NCTC12167_01780)	-	1792176..1792340 (+)	165	WP_003091944.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
EL076_RS09030 (NCTC12167_01781)	-	1792388..1792525 (+)	138	WP_003092077.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
EL076_RS09035 (NCTC12167_01782)	-	1792578..1792841 (+)	264	WP_003091993.1	hypothetical protein	-
EL076_RS09040 (NCTC12167_01783)	tadA	1792922..1793440 (-)	519	WP_003091914.1	tRNA adenosine(34) deaminase TadA	-
EL076_RS09045 (NCTC12167_01784)	ssbA	1794139..1794531 (-)	393	WP_003092010.1	single-stranded DNA-binding protein	Machinery gene
EL076_RS09050 (NCTC12167_01785)	-	1794736..1794963 (-)	228	WP_064520013.1	sulfurtransferase TusA family protein	-
EL076_RS09055 (NCTC12167_01786)	-	1794978..1796009 (-)	1032	WP_003091956.1	YeeE/YedE family protein	-
EL076_RS09060 (NCTC12167_01787)	ytpR	1796147..1796770 (-)	624	WP_003092102.1	YtpR family tRNA-binding protein	-
EL076_RS09065 (NCTC12167_01788)	-	1796780..1797094 (-)	315	WP_064520012.1	thioredoxin family protein	-
EL076_RS09070 (NCTC12167_01789)	-	1797091..1797375 (-)	285	WP_003091918.1	DUF4651 domain-containing protein	-
EL076_RS09075 (NCTC12167_01790)	pepA	1797475..1798542 (+)	1068	WP_048788014.1	glutamyl aminopeptidase	-
EL076_RS09080 (NCTC12167_01791)	proC	1798558..1799328 (+)	771	WP_064520010.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14755.66 Da
• Isoelectric Point: 5.9275

>NTDB_id=1119912 EL076_RS09045 WP_003092010.1 1794139..1794531(-) (ssbA) [Streptococcus vestibularis strain NCTC12167]
MYNKVILIGRLTATPEIVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYASKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=1119912 EL076_RS09045 WP_003092010.1 1794139..1794531(-) (ssbA) [Streptococcus vestibularis strain NCTC12167]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATAGTTAAGACTGCTAGCGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATCACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACCTTGGCATCTTATGCTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGATCTGATTTTAGAAGAAGAACTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	78.626	100	0.792
ssbB	Streptococcus sobrinus strain NIDR 6715-7	75.573	100	0.762
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.809	100	0.754
ssbB/cilA	Streptococcus mitis SK321	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae R6	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae Rx1	74.046	100	0.746
ssbB/cilA	Streptococcus pneumoniae D39	74.046	100	0.746
ssbB/cilA	Streptococcus mitis NCTC 12261	72.519	100	0.731
ssbB	Lactococcus lactis subsp. cremoris KW2	63.393	86.154	0.546
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377