Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EW031_RS04640 Genome accession   NZ_LR130518
Coordinates   898292..898711 (+) Length   139 a.a.
NCBI ID   WP_129790258.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2986 isolate BPH2986     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 893292..903711
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW031_RS04575 - 893386..894024 (-) 639 WP_000874711.1 XRE family transcriptional regulator -
  EW031_RS04580 - 894214..894468 (+) 255 WP_031790429.1 helix-turn-helix domain-containing protein -
  EW031_RS04585 - 894484..894687 (+) 204 WP_000394020.1 hypothetical protein -
  EW031_RS15745 - 894684..894818 (-) 135 WP_001119050.1 hypothetical protein -
  EW031_RS04590 - 894875..895666 (+) 792 WP_001148575.1 phage antirepressor -
  EW031_RS04595 tscA 895667..895891 (+) 225 WP_000187184.1 type II toxin-antitoxin system antitoxin TscA -
  EW031_RS04600 - 895931..896134 (+) 204 Protein_854 hypothetical protein -
  EW031_RS04605 - 896102..896347 (-) 246 WP_000122244.1 hypothetical protein -
  EW031_RS04610 - 896418..896639 (+) 222 WP_000594795.1 hypothetical protein -
  EW031_RS04615 - 896632..896802 (+) 171 WP_129790254.1 DUF1270 domain-containing protein -
  EW031_RS04620 - 896783..897121 (+) 339 WP_015990309.1 transcriptional regulator -
  EW031_RS04625 - 897185..897445 (+) 261 WP_129790255.1 DUF1108 family protein -
  EW031_RS04630 - 897455..897676 (+) 222 WP_129790256.1 DUF2483 family protein -
  EW031_RS04635 - 897669..898292 (+) 624 WP_129790257.1 DUF1071 domain-containing protein -
  EW031_RS04640 ssb 898292..898711 (+) 420 WP_129790258.1 single-stranded DNA-binding protein Machinery gene
  EW031_RS04645 - 898722..899273 (+) 552 WP_031927924.1 NUMOD4 domain-containing protein -
  EW031_RS04650 - 899274..899948 (+) 675 WP_129790259.1 putative HNHc nuclease -
  EW031_RS04655 - 899941..900696 (+) 756 WP_001037657.1 DnaD domain protein -
  EW031_RS04660 - 900696..901052 (+) 357 WP_001132243.1 hypothetical protein -
  EW031_RS04665 - 901049..902290 (+) 1242 WP_001106166.1 DnaB helicase C-terminal domain-containing protein -
  EW031_RS04670 - 902287..902502 (+) 216 WP_001024405.1 hypothetical protein -
  EW031_RS04675 - 902506..902727 (+) 222 WP_001123679.1 DUF3269 family protein -
  EW031_RS04680 - 902737..903144 (+) 408 WP_000401953.1 RusA family crossover junction endodeoxyribonuclease -
  EW031_RS04685 - 903144..903329 (+) 186 WP_015988668.1 DUF3113 family protein -
  EW031_RS04690 - 903330..903598 (+) 269 Protein_872 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 15579.21 Da        Isoelectric Point: 6.3912

>NTDB_id=1116937 EW031_RS04640 WP_129790258.1 898292..898711(+) (ssb) [Staphylococcus aureus strain BPH2986 isolate BPH2986]
MLNRTVLVGRLTKDPELRSTPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVEKYLSKGSLAGVDGRLQTR
NYENKDGKRVYVTEVVADSVQFLEPKNNNQQSNRQQNGQTQTGNNPFDNNVDSIEDLPF

Nucleotide


Download         Length: 420 bp        

>NTDB_id=1116937 EW031_RS04640 WP_129790258.1 898292..898711(+) (ssb) [Staphylococcus aureus strain BPH2986 isolate BPH2986]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGTACACCAAATGGCGTAAATGTAGG
GACATTCACATTAGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGACTTTATAAATGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTGAAAAATACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGACGACTACAAACACGT
AATTACGAAAACAAAGATGGGAAACGTGTATATGTTACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCAAAGAA
TAACAACCAACAGAGTAACCGACAACAAAATGGGCAAACTCAAACAGGTAATAATCCTTTTGATAACAACGTAGACTCTA
TAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

52.353

100

0.64
  ssbA Bacillus subtilis subsp. subtilis str. 168

79.439

76.978

0.612
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

76.259

0.453
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.604

100

0.446
  ssbA Streptococcus mutans UA159

43.885

100

0.439
  ssbB/cilA Streptococcus mitis NCTC 12261

43.165

100

0.432
  ssbB/cilA Streptococcus pneumoniae TIGR4

43.165

100

0.432
  ssbB/cilA Streptococcus pneumoniae Rx1

42.446

100

0.424
  ssbB/cilA Streptococcus pneumoniae D39

42.446

100

0.424
  ssbB/cilA Streptococcus pneumoniae R6

42.446

100

0.424
  ssbB/cilA Streptococcus mitis SK321

42.446

100

0.424

Multiple sequence alignment