Detailed information NTG1116213

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: EQB41_RS09875
• Genome accession: NZ_LR129840
• Coordinates: 1833835..1834230 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282467.1
• Uniprot ID: A0A098Z0L0
• Organism: Streptococcus pneumoniae strain 4496 isolate 4496
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1828835..1839230

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQB41_RS09845	recX	1828912..1829688 (+)	777	WP_127820848.1	recombination regulator RecX	-
EQB41_RS09850	-	1829777..1830310 (+)	534	WP_000775321.1	DUF402 domain-containing protein	-
EQB41_RS09860	-	1830750..1831505 (-)	756	Protein_1851	epoxyqueuosine reductase QueH	-
EQB41_RS09865	groL	1831643..1833265 (-)	1623	WP_000031573.1	chaperonin GroEL	-
EQB41_RS09870	groES	1833281..1833565 (-)	285	WP_000917330.1	co-chaperone GroES	-
EQB41_RS09875	ssbB/cilA	1833835..1834230 (-)	396	WP_000282467.1	single-stranded DNA-binding protein	Machinery gene
EQB41_RS09880	-	1834308..1835069 (-)	762	WP_001107757.1	SDR family oxidoreductase	-
EQB41_RS09885	ytpR	1835102..1835728 (-)	627	WP_050203507.1	YtpR family tRNA-binding protein	-
EQB41_RS09890	-	1835744..1836076 (-)	333	WP_127820849.1	thioredoxin family protein	-
EQB41_RS09895	-	1836073..1836372 (-)	300	WP_001818001.1	DUF4651 domain-containing protein	-
EQB41_RS12670	-	1836466..1836597 (+)	132	WP_001811306.1	hypothetical protein	-
EQB41_RS09900	-	1836622..1836819 (-)	198	Protein_1860	N-acetylmuramoyl-L-alanine amidase family protein	-
EQB41_RS09905	-	1837061..1837735 (-)	675	WP_000725750.1	LiaF transmembrane domain-containing protein	-
EQB41_RS09910	-	1837741..1838187 (-)	447	WP_000776589.1	LytTR family DNA-binding domain-containing protein	-
EQB41_RS09915	-	1838301..1838804 (-)	504	WP_127820850.1	phosphatase PAP2 family protein	-
EQB41_RS09920	-	1838801..1839163 (-)	363	WP_000078805.1	DUF2200 domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14925.89 Da
• Isoelectric Point: 5.9409

>NTDB_id=1116213 EQB41_RS09875 WP_000282467.1 1833835..1834230(-) (ssbB/cilA) [Streptococcus pneumoniae strain 4496 isolate 4496]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=1116213 EQB41_RS09875 WP_000282467.1 1833835..1834230(-) (ssbB/cilA) [Streptococcus pneumoniae strain 4496 isolate 4496]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTAACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCCATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTAGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: A0A098Z0L0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae D39	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	100	100	1
ssbB/cilA	Streptococcus pneumoniae R6	100	100	1
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	98.473	100	0.985
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405