Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SABB155_RS09865 Genome accession   NZ_LN854556
Coordinates   1971949..1972377 (-) Length   142 a.a.
NCBI ID   WP_000934385.1    Uniprot ID   A0A2K0CLZ8
Organism   Staphylococcus aureus strain BB155     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1937322..1979562 1971949..1972377 within 0


Gene organization within MGE regions


Location: 1937322..1979562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABB155_RS09625 (SABB155_17590) - 1937322..1937837 (-) 516 WP_054189639.1 type 1 glutamine amidotransferase domain-containing protein -
  SABB155_RS09630 (SABB155_17600) - 1937967..1938128 (-) 162 WP_001005407.1 SE1561 family protein -
  SABB155_RS14695 - 1938475..1938555 (+) 81 WP_100250272.1 hypothetical protein -
  SABB155_RS09635 (SABB155_17610) - 1939201..1940646 (-) 1446 WP_061745622.1 SH3 domain-containing protein -
  SABB155_RS09640 (SABB155_17620) - 1940627..1941064 (-) 438 WP_061745623.1 phage holin -
  SABB155_RS09645 (SABB155_17630) - 1941120..1941515 (-) 396 WP_000398857.1 hypothetical protein -
  SABB155_RS09650 (SABB155_17640) - 1941520..1942758 (-) 1239 WP_061745624.1 BppU family phage baseplate upper protein -
  SABB155_RS09655 (SABB155_17650) - 1942771..1944669 (-) 1899 WP_061745625.1 glucosaminidase domain-containing protein -
  SABB155_RS09660 (SABB155_17660) - 1944806..1945105 (-) 300 WP_000466778.1 DUF2951 domain-containing protein -
  SABB155_RS09665 (SABB155_17670) - 1945145..1945318 (-) 174 WP_000782200.1 XkdX family protein -
  SABB155_RS09670 (SABB155_17680) - 1945322..1945699 (-) 378 WP_000705896.1 DUF2977 domain-containing protein -
  SABB155_RS09675 (SABB155_17690) - 1945699..1947522 (-) 1824 WP_000634521.1 phage baseplate upper protein -
  SABB155_RS09680 (SABB155_17700) - 1947522..1949432 (-) 1911 WP_061745626.1 hypothetical protein -
  SABB155_RS09685 (SABB155_17710) - 1949447..1951345 (-) 1899 WP_061745627.1 SGNH/GDSL hydrolase family protein -
  SABB155_RS09690 (SABB155_17720) - 1951354..1952301 (-) 948 WP_000350675.1 phage tail family protein -
  SABB155_RS09695 (SABB155_17730) - 1952314..1955778 (-) 3465 WP_061745628.1 hypothetical protein -
  SABB155_RS09700 (SABB155_17740) - 1955795..1956139 (-) 345 WP_000105584.1 hypothetical protein -
  SABB155_RS09705 (SABB155_17750) - 1956169..1956534 (-) 366 WP_001100163.1 tail assembly chaperone -
  SABB155_RS09710 (SABB155_17760) - 1956596..1957177 (-) 582 WP_000002576.1 phage major tail protein, TP901-1 family -
  SABB155_RS09715 (SABB155_17770) - 1957196..1957579 (-) 384 WP_000188643.1 hypothetical protein -
  SABB155_RS09720 (SABB155_17780) - 1957591..1957938 (-) 348 WP_001017815.1 HK97-gp10 family putative phage morphogenesis protein -
  SABB155_RS09725 (SABB155_17790) - 1957938..1958240 (-) 303 WP_001268312.1 hypothetical protein -
  SABB155_RS09730 (SABB155_17800) - 1958237..1958569 (-) 333 WP_000208960.1 phage head-tail connector protein -
  SABB155_RS09735 (SABB155_17810) - 1958578..1958865 (-) 288 WP_001114086.1 hypothetical protein -
  SABB155_RS09740 (SABB155_17820) - 1958887..1959861 (-) 975 WP_000438503.1 phage major capsid protein -
  SABB155_RS09745 (SABB155_17830) - 1959875..1960489 (-) 615 WP_000354305.1 DUF4355 domain-containing protein -
  SABB155_RS14880 - 1960708..1960794 (-) 87 Protein_1855 hypothetical protein -
  SABB155_RS09750 (SABB155_17850) - 1960876..1961871 (-) 996 WP_025380771.1 minor capsid protein -
  SABB155_RS09755 (SABB155_17860) - 1961878..1963413 (-) 1536 WP_061745629.1 phage portal protein -
  SABB155_RS09760 (SABB155_17870) - 1963424..1964701 (-) 1278 WP_061745630.1 PBSX family phage terminase large subunit -
  SABB155_RS09765 (SABB155_17880) - 1964688..1965128 (-) 441 WP_061745631.1 terminase small subunit -
  SABB155_RS09770 (SABB155_17890) - 1965315..1965734 (-) 420 WP_000058632.1 transcriptional regulator -
  SABB155_RS09775 (SABB155_17900) - 1965749..1965895 (-) 147 WP_000990007.1 hypothetical protein -
  SABB155_RS09780 (SABB155_17910) rinB 1965896..1966069 (-) 174 WP_025174872.1 transcriptional activator RinB -
  SABB155_RS09785 (SABB155_17920) - 1966072..1966272 (-) 201 WP_001125015.1 hypothetical protein -
  SABB155_RS09790 (SABB155_17930) - 1966247..1966435 (-) 189 WP_000195817.1 DUF1381 domain-containing protein -
  SABB155_RS09795 (SABB155_17940) - 1966452..1966625 (-) 174 WP_001209216.1 hypothetical protein -
  SABB155_RS09800 (SABB155_17950) - 1966662..1967195 (-) 534 WP_015984502.1 dUTP diphosphatase -
  SABB155_RS09805 (SABB155_17960) - 1967188..1967358 (-) 171 WP_000714412.1 hypothetical protein -
  SABB155_RS09810 (SABB155_17970) - 1967345..1967599 (-) 255 WP_001661914.1 DUF1024 family protein -
  SABB155_RS09815 (SABB155_17980) - 1967614..1967862 (-) 249 WP_001622142.1 phi PVL orf 51-like protein -
  SABB155_RS09820 (SABB155_17990) - 1967863..1968222 (-) 360 WP_001622141.1 SA1788 family PVL leukocidin-associated protein -
  SABB155_RS09825 (SABB155_18000) - 1968223..1968411 (-) 189 WP_020808085.1 DUF3113 family protein -
  SABB155_RS09830 (SABB155_18010) - 1968416..1968820 (-) 405 WP_000049795.1 DUF1064 domain-containing protein -
  SABB155_RS09835 (SABB155_18020) - 1968830..1969051 (-) 222 WP_001123695.1 DUF3269 family protein -
  SABB155_RS09840 (SABB155_18030) - 1969064..1969222 (-) 159 WP_000256589.1 hypothetical protein -
  SABB155_RS09845 (SABB155_18040) - 1969216..1969995 (-) 780 WP_000803062.1 ATP-binding protein -
  SABB155_RS09850 (SABB155_18050) - 1970005..1970775 (-) 771 WP_000190254.1 conserved phage C-terminal domain-containing protein -
  SABB155_RS09855 (SABB155_18060) - 1970841..1971122 (+) 282 WP_000414755.1 hypothetical protein -
  SABB155_RS14790 (SABB155_18070) - 1971115..1971264 (-) 150 WP_001081076.1 hypothetical protein -
  SABB155_RS09860 (SABB155_18080) - 1971261..1971935 (-) 675 WP_001124438.1 putative HNHc nuclease -
  SABB155_RS09865 (SABB155_18090) ssbA 1971949..1972377 (-) 429 WP_000934385.1 single-stranded DNA-binding protein Machinery gene
  SABB155_RS09870 (SABB155_18100) - 1972377..1973000 (-) 624 WP_000139720.1 DUF1071 domain-containing protein -
  SABB155_RS09875 (SABB155_18110) - 1972993..1973214 (-) 222 WP_000815402.1 DUF2483 family protein -
  SABB155_RS09880 (SABB155_18120) - 1973224..1973484 (-) 261 WP_000291089.1 DUF1108 family protein -
  SABB155_RS09885 (SABB155_18130) - 1973576..1973737 (-) 162 WP_000048126.1 DUF1270 family protein -
  SABB155_RS09890 (SABB155_18140) - 1973730..1973951 (-) 222 WP_000977380.1 hypothetical protein -
  SABB155_RS09895 (SABB155_18150) - 1974022..1974579 (+) 558 WP_000388992.1 hypothetical protein -
  SABB155_RS09900 (SABB155_18160) - 1974600..1974743 (-) 144 WP_000939503.1 hypothetical protein -
  SABB155_RS09905 (SABB155_18170) - 1974774..1974968 (-) 195 WP_001148854.1 hypothetical protein -
  SABB155_RS09910 (SABB155_18180) - 1974985..1975770 (-) 786 WP_061745632.1 phage antirepressor KilAC domain-containing protein -
  SABB155_RS09915 (SABB155_18190) - 1975770..1975964 (-) 195 WP_044122308.1 helix-turn-helix domain-containing protein -
  SABB155_RS09920 (SABB155_18200) - 1976242..1976580 (+) 339 WP_061745633.1 helix-turn-helix domain-containing protein -
  SABB155_RS09925 (SABB155_18210) - 1976593..1977264 (+) 672 WP_061745634.1 ImmA/IrrE family metallo-endopeptidase -
  SABB155_RS09930 (SABB155_18220) - 1977312..1978244 (+) 933 WP_000392183.1 hypothetical protein -
  SABB155_RS09935 (SABB155_18230) - 1978224..1978403 (-) 180 WP_000337827.1 hypothetical protein -
  SABB155_RS09940 (SABB155_18240) - 1978516..1979562 (+) 1047 WP_001145722.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15872.58 Da        Isoelectric Point: 8.4825

>NTDB_id=1114674 SABB155_RS09865 WP_000934385.1 1971949..1972377(-) (ssbA) [Staphylococcus aureus strain BB155]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1114674 SABB155_RS09865 WP_000934385.1 1971949..1972377(-) (ssbA) [Staphylococcus aureus strain BB155]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGACTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2K0CLZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.958

100

0.423
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

39.437

100

0.394
  ssbB/cilA Streptococcus mitis SK321

39.437

100

0.394

Multiple sequence alignment