Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SRS_RS06640 Genome accession   NZ_LN626917
Coordinates   1351491..1351919 (-) Length   142 a.a.
NCBI ID   WP_045178958.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1316616..1360289 1351491..1351919 within 0


Gene organization within MGE regions


Location: 1316616..1360289
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SRS_RS06375 - 1316616..1316801 (-) 186 WP_001286804.1 hypothetical protein -
  SRS_RS06380 - 1316803..1316913 (-) 111 WP_031922866.1 hypothetical protein -
  SRS_RS06385 - 1316984..1317136 (-) 153 WP_078103528.1 hypothetical protein -
  SRS_RS06390 - 1317386..1318831 (-) 1446 WP_045178875.1 SH3 domain-containing protein -
  SRS_RS06395 - 1318812..1319249 (-) 438 WP_045178878.1 phage holin -
  SRS_RS06400 - 1319294..1319689 (-) 396 WP_045178881.1 hypothetical protein -
  SRS_RS06405 - 1319694..1320932 (-) 1239 WP_045178883.1 BppU family phage baseplate upper protein -
  SRS_RS06410 - 1320945..1322501 (-) 1557 Protein_1256 N-acetylglucosaminidase -
  SRS_RS15825 - 1323024..1323380 (-) 357 WP_052671739.1 hypothetical protein -
  SRS_RS06420 - 1323422..1323783 (-) 362 Protein_1258 CHAP domain-containing protein -
  SRS_RS06425 - 1323920..1324219 (-) 300 WP_045178887.1 DUF2951 domain-containing protein -
  SRS_RS06430 - 1324260..1324433 (-) 174 WP_001800921.1 XkdX family protein -
  SRS_RS06435 - 1324437..1324814 (-) 378 WP_045178890.1 DUF2977 domain-containing protein -
  SRS_RS06440 - 1324814..1326637 (-) 1824 WP_045178892.1 phage baseplate upper protein -
  SRS_RS06445 - 1326637..1328547 (-) 1911 WP_045178895.1 hypothetical protein -
  SRS_RS06450 - 1328562..1330463 (-) 1902 WP_045178903.1 SGNH/GDSL hydrolase family protein -
  SRS_RS06455 - 1330472..1331419 (-) 948 WP_031792905.1 phage tail family protein -
  SRS_RS06460 - 1331432..1334899 (-) 3468 WP_045178906.1 membrane protein -
  SRS_RS06465 - 1334916..1335260 (-) 345 WP_000105584.1 hypothetical protein -
  SRS_RS06470 - 1335290..1335655 (-) 366 WP_001100161.1 tail assembly chaperone -
  SRS_RS06475 - 1335717..1336298 (-) 582 WP_045178910.1 phage major tail protein, TP901-1 family -
  SRS_RS06480 - 1336317..1336700 (-) 384 WP_000188649.1 hypothetical protein -
  SRS_RS06485 - 1336712..1337059 (-) 348 WP_045178913.1 HK97-gp10 family putative phage morphogenesis protein -
  SRS_RS06490 - 1337059..1337361 (-) 303 WP_045178916.1 hypothetical protein -
  SRS_RS06495 - 1337358..1337690 (-) 333 WP_045178918.1 phage head-tail connector protein -
  SRS_RS06500 - 1337699..1337986 (-) 288 WP_045178921.1 hypothetical protein -
  SRS_RS06505 - 1338008..1338982 (-) 975 WP_045178923.1 phage major capsid protein -
  SRS_RS06510 - 1338996..1339610 (-) 615 WP_045178926.1 DUF4355 domain-containing protein -
  SRS_RS06515 - 1339745..1339915 (-) 171 WP_045178928.1 hypothetical protein -
  SRS_RS06520 - 1339988..1340983 (-) 996 WP_045178931.1 minor capsid protein -
  SRS_RS06525 - 1340990..1341406 (-) 417 Protein_1279 phage portal protein -
  SRS_RS14705 - 1341636..1342265 (-) 630 WP_052671740.1 hypothetical protein -
  SRS_RS06540 - 1342368..1343507 (-) 1140 Protein_1281 phage portal protein -
  SRS_RS06545 - 1343518..1344795 (-) 1278 WP_000169945.1 PBSX family phage terminase large subunit -
  SRS_RS06550 - 1344782..1345222 (-) 441 WP_045178932.1 terminase small subunit -
  SRS_RS06555 - 1345409..1345828 (-) 420 WP_000058632.1 transcriptional regulator -
  SRS_RS06560 - 1345843..1345989 (-) 147 WP_000989998.1 hypothetical protein -
  SRS_RS06565 rinB 1345990..1346163 (-) 174 WP_000595257.1 transcriptional activator RinB -
  SRS_RS06570 - 1346156..1346392 (-) 237 WP_045178936.1 DUF7366 family protein -
  SRS_RS06575 - 1346385..1346588 (-) 204 WP_045178938.1 hypothetical protein -
  SRS_RS06580 - 1346585..1346791 (-) 207 WP_045179693.1 DUF1381 domain-containing protein -
  SRS_RS06585 - 1346808..1347068 (-) 261 WP_045178942.1 hypothetical protein -
  SRS_RS06590 - 1347130..1347663 (-) 534 WP_045178572.1 dUTP diphosphatase -
  SRS_RS06595 - 1347675..1347923 (-) 249 WP_045178944.1 SAV1978 family virulence-associated passenger protein -
  SRS_RS06600 - 1347924..1348286 (-) 363 WP_045178946.1 SA1788 family PVL leukocidin-associated protein -
  SRS_RS06605 - 1348287..1348472 (-) 186 WP_045178949.1 DUF3113 family protein -
  SRS_RS06610 - 1348477..1348881 (-) 405 WP_000049798.1 DUF1064 domain-containing protein -
  SRS_RS06615 - 1348892..1349113 (-) 222 WP_001123673.1 DUF3269 family protein -
  SRS_RS06620 - 1349126..1349284 (-) 159 WP_000628833.1 hypothetical protein -
  SRS_RS06625 - 1349281..1350066 (-) 786 WP_031900157.1 ATP-binding protein -
  SRS_RS06630 - 1350079..1350810 (-) 732 WP_045178953.1 helix-turn-helix domain-containing protein -
  SRS_RS06635 - 1350803..1351477 (-) 675 WP_045178956.1 putative HNHc nuclease -
  SRS_RS06640 ssbA 1351491..1351919 (-) 429 WP_045178958.1 single-stranded DNA-binding protein Machinery gene
  SRS_RS06645 - 1351919..1352557 (-) 639 WP_001043063.1 ERF family protein -
  SRS_RS06650 - 1352557..1353036 (-) 480 Protein_1303 siphovirus Gp157 family protein -
  SRS_RS06655 - 1353051..1353311 (-) 261 WP_045178961.1 DUF1108 family protein -
  SRS_RS06660 - 1353375..1353689 (-) 315 WP_045178963.1 hypothetical protein -
  SRS_RS06665 - 1353694..1353864 (-) 171 WP_031782757.1 DUF1270 domain-containing protein -
  SRS_RS15875 - 1353857..1353985 (-) 129 WP_001559112.1 hypothetical protein -
  SRS_RS06670 - 1354044..1354274 (+) 231 WP_000395457.1 hypothetical protein -
  SRS_RS06675 - 1354478..1354672 (-) 195 WP_000390105.1 hypothetical protein -
  SRS_RS06680 - 1354689..1355453 (-) 765 WP_001148560.1 phage antirepressor -
  SRS_RS06685 - 1355530..1355742 (-) 213 WP_000132644.1 helix-turn-helix transcriptional regulator -
  SRS_RS06690 - 1355895..1356209 (+) 315 WP_001118607.1 helix-turn-helix domain-containing protein -
  SRS_RS06695 - 1356231..1356689 (+) 459 WP_045178970.1 ImmA/IrrE family metallo-endopeptidase -
  SRS_RS06700 - 1356827..1357732 (+) 906 WP_045178971.1 hypothetical protein -
  SRS_RS06705 - 1357669..1357869 (-) 201 WP_000143212.1 excisionase -
  SRS_RS06710 - 1357977..1359362 (+) 1386 WP_000861313.1 recombinase family protein -
  SRS_RS06715 rpmF 1359479..1359652 (-) 174 WP_000290472.1 50S ribosomal protein L32 -
  SRS_RS06725 - 1359732..1360289 (-) 558 WP_000872158.1 YceD family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16020.59 Da        Isoelectric Point: 5.8724

>NTDB_id=1113681 SRS_RS06640 WP_045178958.1 1351491..1351919(-) (ssbA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
MLNRTVLVGRLTKDPEYRTTPDGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAITDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=1113681 SRS_RS06640 WP_045178958.1 1351491..1351919(-) (ssbA) [Staphylococcus aureus strain ILRI_Eymole1/1 isolate Staphylococcus aureus isolate ILRI_Eymole1/1]
ATGCTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCGGATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTACTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.14

100

0.704
  ssb Latilactobacillus sakei subsp. sakei 23K

51.176

100

0.613
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.958

100

0.423
  ssbA Streptococcus mutans UA159

40.845

100

0.408
  ssbB/cilA Streptococcus mitis NCTC 12261

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.141

100

0.401
  ssbB/cilA Streptococcus pneumoniae Rx1

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae D39

39.437

100

0.394
  ssbB/cilA Streptococcus pneumoniae R6

39.437

100

0.394
  ssbB/cilA Streptococcus mitis SK321

39.437

100

0.394

Multiple sequence alignment