Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BN1079_RS08825 Genome accession   NZ_CCSF01000001
Coordinates   1897214..1898431 (-) Length   405 a.a.
NCBI ID   WP_037023748.1    Uniprot ID   -
Organism   Pseudomonas saudiphocaensis strain 20_BN     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892214..1903431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BN1079_RS08795 (BN1079_01802) - 1892732..1893172 (-) 441 WP_037023739.1 c-type cytochrome -
  BN1079_RS08800 (BN1079_01804) - 1893595..1893846 (-) 252 WP_037023740.1 cytochrome C oxidase subunit IV family protein -
  BN1079_RS08805 (BN1079_01805) - 1893857..1894444 (-) 588 WP_037023742.1 cytochrome c oxidase subunit 3 -
  BN1079_RS08810 (BN1079_01806) - 1894428..1895207 (-) 780 WP_171819327.1 CbbQ/NirQ/NorQ/GpvN family protein -
  BN1079_RS08815 (BN1079_01807) - 1895773..1896087 (+) 315 WP_037023746.1 c-type cytochrome -
  BN1079_RS08820 (BN1079_01808) pilD 1896184..1897050 (-) 867 WP_037026723.1 prepilin peptidase Machinery gene
  BN1079_RS08825 (BN1079_01810) pilC 1897214..1898431 (-) 1218 WP_037023748.1 type II secretion system F family protein Machinery gene
  BN1079_RS08830 (BN1079_01811) pilB 1898434..1900137 (-) 1704 WP_037023749.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BN1079_RS08835 (BN1079_01812) - 1900459..1900896 (+) 438 WP_037023750.1 pilin -
  BN1079_RS08840 (BN1079_01813) - 1901246..1902634 (+) 1389 WP_037023751.1 O-antigen ligase family protein -
  BN1079_RS08845 (BN1079_01814) - 1902684..1903328 (-) 645 WP_037023752.1 TIGR02281 family clan AA aspartic protease -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44266.03 Da        Isoelectric Point: 9.8187

>NTDB_id=111344 BN1079_RS08825 WP_037023748.1 1897214..1898431(-) (pilC) [Pseudomonas saudiphocaensis strain 20_BN]
MAQKAIKNSVFIWEGLDRQGAKVKGELSGVSPALVKAQLRKQGINPQKVRKKSISLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIAEGFDNPNMRKLVDDLKQEVAAGNSFATSLRKKPQYFDELYCNLVDSGEQSGSLETLLDRVATYKEKT
EQLKAKIKKAMNYPIAVIAVAVIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSELLQEWWYIVLVGMIGAAYAFK
QAHSRSQKFRNWFDRLMLKVPVVGDILYKSSVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATAKVKSDVSSGM
QLNFSMRTTGTFPSMAVQMTAIGEESGSLDEMLAKVATFYEEEVDNMVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGAVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=111344 BN1079_RS08825 WP_037023748.1 1897214..1898431(-) (pilC) [Pseudomonas saudiphocaensis strain 20_BN]
ATGGCGCAGAAAGCGATCAAAAACAGTGTGTTCATCTGGGAAGGCCTCGACCGGCAAGGCGCGAAGGTCAAGGGTGAACT
GAGCGGCGTCAGCCCGGCACTGGTCAAGGCGCAACTGCGCAAACAGGGCATCAACCCACAGAAGGTTCGCAAGAAGTCGA
TTTCGTTGTTCAGCGCGGGCAAGAAGATCAAGCCCATGGACATTGCGCTGTTTACCCGGCAGATGGCCACCATGATGAAA
GCTGGTGTGCCGCTGTTGCAGTCGTTCGACATCATTGCTGAAGGATTCGATAACCCCAACATGCGCAAGCTGGTGGACGA
CCTCAAGCAGGAAGTGGCTGCGGGCAACAGCTTTGCAACGTCGCTGCGCAAGAAACCGCAATATTTCGATGAGCTGTACT
GCAACCTGGTGGATTCGGGGGAGCAGTCCGGTTCGCTGGAAACGTTGCTCGACCGGGTTGCGACATACAAGGAGAAAACC
GAGCAGCTCAAGGCCAAGATCAAGAAGGCGATGAACTACCCGATTGCGGTCATTGCCGTGGCCGTGATCGTTTCGGCCAT
TCTGCTGATCAAGGTGGTGCCGCAGTTCCAGGAAGTTTTTGCCAACTTCGGCGCGGAACTGCCGGCCTTCACGCTGATGG
TGATCGGCCTTTCCGAACTGCTGCAGGAATGGTGGTATATCGTGCTGGTCGGAATGATTGGCGCAGCTTATGCCTTCAAG
CAGGCACACAGCCGCTCGCAGAAGTTTCGCAACTGGTTTGACCGGCTGATGCTGAAAGTGCCGGTGGTGGGCGACATTCT
GTACAAGTCTTCGGTGGCGCGTTTCGCCCGGACGCTTTCGACCACATTCGCGGCGGGCGTGCCGCTGGTGGATGCGCTGG
ACTCGGTGGCAGGCGCCACGGGCAACGTGGTGTTTCGCAATGCTACGGCGAAGGTCAAAAGCGATGTTTCCAGCGGTATG
CAACTGAACTTCTCGATGCGCACCACCGGAACCTTCCCGAGCATGGCGGTGCAAATGACAGCGATCGGCGAGGAATCCGG
TTCGCTGGATGAGATGCTGGCCAAGGTGGCGACCTTCTATGAGGAAGAAGTGGACAATATGGTCGATGGGCTTACCGCGC
TGATGGAGCCGATGATCATGGCCGTCCTTGGTGTGCTGGTGGGCGGACTGATCATTGCGATGTATCTGCCGATTTTCCAG
CTGGGCGCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

93.58

100

0.936
  pilC Acinetobacter baylyi ADP1

60.197

100

0.605
  pilC Acinetobacter baumannii D1279779

58.765

100

0.588
  pilC Legionella pneumophila strain ERS1305867

53.96

99.753

0.538
  pilG Neisseria gonorrhoeae MS11

45.906

99.506

0.457
  pilG Neisseria meningitidis 44/76-A

45.906

99.506

0.457
  pilC Vibrio cholerae strain A1552

41.919

97.778

0.41
  pilC Vibrio campbellii strain DS40M4

40.648

99.012

0.402
  pilC Thermus thermophilus HB27

36.658

99.012

0.363

Multiple sequence alignment