Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   LOK40_RS15525 Genome accession   NZ_HG992336
Coordinates   3644582..3645841 (+) Length   419 a.a.
NCBI ID   WP_127159846.1    Uniprot ID   -
Organism   Xanthomonas arboricola strain 1311a isolate 1311a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3639582..3650841
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOK40_RS15510 (XA1311A_30320) pilR 3640152..3641546 (+) 1395 WP_127159848.1 sigma-54 dependent transcriptional regulator Regulator
  LOK40_RS15515 (XA1311A_30330) pilB 3641788..3643524 (-) 1737 WP_127159907.1 type IV-A pilus assembly ATPase PilB Machinery gene
  LOK40_RS15520 (XA1311A_30340) - 3643757..3644206 (-) 450 WP_127159847.1 pilin -
  LOK40_RS15525 (XA1311A_30350) pilC 3644582..3645841 (+) 1260 WP_127159846.1 type II secretion system F family protein Machinery gene
  LOK40_RS15530 (XA1311A_30360) - 3645848..3646711 (+) 864 WP_039519369.1 A24 family peptidase -
  LOK40_RS15535 (XA1311A_30370) coaE 3646725..3647348 (+) 624 WP_127159845.1 dephospho-CoA kinase -
  LOK40_RS15540 - 3647448..3647603 (+) 156 Protein_3049 SymE family type I addiction module toxin -
  LOK40_RS15545 (XA1311A_30380) - 3647708..3649042 (-) 1335 WP_016904089.1 HAMP domain-containing sensor histidine kinase -
  LOK40_RS15550 (XA1311A_30390) - 3649035..3649712 (-) 678 WP_006448355.1 response regulator transcription factor -
  LOK40_RS15555 (XA1311A_30400) - 3649739..3650217 (-) 479 Protein_3052 hypothetical protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45623.80 Da        Isoelectric Point: 10.2972

>NTDB_id=1112300 LOK40_RS15525 WP_127159846.1 3644582..3645841(+) (pilC) [Xanthomonas arboricola strain 1311a isolate 1311a]
MSASRTAIAKSSASRDTSPLPLFVWEGTDKRGIKMKGEQVARNANMLRAELRRQGITPNIVKSKPKPLFGAAGKKVTAKE
ISFFSRQMATMMKSGVPIVSALEIIGSGQKNPRMRDMVGKIRTDIEGGSSLHEAISRHPVQFDELYRNLVRAGEGAGVLE
TVLDTIASYKENIEALKGKIKKALFYPAMVMAVALIVSSILLIWVVPQFEDVFKGFGAELPAFTQLIVNASRFMVAWWWL
ILFVAVGTVTGFFFAYKRSPAMQHGMDRLILKVPVIGQIMHNSAIARFARTTAVTFKAGVPLVEALGIVAGATGNSVYEA
AVQRMRDDVSVGYPVNVAMKQVNLFPHMVIQMTAIGEEAGALDAMLFKVAEYFEQEVNNAVDALSSLLEPMIMVFIGTIV
GGMVIGMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=1112300 LOK40_RS15525 WP_127159846.1 3644582..3645841(+) (pilC) [Xanthomonas arboricola strain 1311a isolate 1311a]
ATGTCCGCAAGCCGTACAGCCATTGCGAAATCGTCAGCATCACGTGACACGAGCCCATTGCCTTTGTTTGTTTGGGAGGG
AACGGACAAGCGAGGCATCAAAATGAAGGGCGAACAGGTTGCCAGAAATGCCAACATGCTTCGCGCTGAACTACGCCGAC
AAGGGATTACACCCAATATTGTAAAATCGAAGCCAAAGCCGTTATTTGGTGCAGCGGGCAAGAAAGTTACAGCTAAAGAG
ATCTCCTTTTTCAGCCGTCAGATGGCGACCATGATGAAATCCGGTGTGCCTATTGTAAGTGCGCTTGAGATCATTGGTAG
CGGTCAAAAGAATCCGCGCATGCGCGATATGGTTGGCAAGATTCGTACTGATATTGAAGGCGGCTCGTCTCTGCACGAAG
CAATCAGCAGGCATCCGGTGCAGTTCGATGAACTGTACCGCAATTTAGTGAGAGCCGGCGAAGGCGCCGGCGTACTTGAA
ACGGTCTTGGATACGATTGCATCTTATAAAGAAAATATTGAAGCACTTAAAGGGAAAATTAAGAAGGCTCTTTTTTATCC
AGCGATGGTGATGGCAGTTGCCCTGATTGTTAGCTCAATCTTGCTTATATGGGTAGTCCCACAATTTGAGGACGTCTTTA
AAGGCTTTGGTGCTGAACTTCCAGCTTTTACTCAGTTAATCGTAAATGCATCTCGCTTCATGGTTGCCTGGTGGTGGCTT
ATTTTGTTTGTCGCCGTAGGCACAGTTACTGGCTTTTTCTTCGCTTACAAGCGTTCGCCAGCCATGCAGCATGGTATGGA
CAGGCTCATTCTCAAGGTCCCCGTAATTGGGCAGATCATGCATAACAGTGCAATTGCCAGATTTGCGCGTACTACCGCAG
TCACCTTCAAAGCCGGGGTACCTCTTGTAGAGGCCCTTGGCATTGTTGCGGGAGCTACTGGAAATTCTGTATATGAAGCT
GCAGTACAGCGTATGCGCGACGACGTGTCTGTAGGGTATCCAGTTAATGTTGCCATGAAACAGGTCAATTTGTTTCCTCA
TATGGTGATCCAGATGACAGCTATCGGCGAAGAAGCTGGCGCACTAGATGCCATGCTGTTCAAAGTTGCCGAGTACTTCG
AACAGGAAGTCAACAATGCTGTGGATGCGCTTAGCAGTTTGTTGGAGCCAATGATCATGGTATTCATCGGCACCATCGTA
GGCGGCATGGTCATCGGCATGTATCTTCCGATCTTCAAACTTGGCGCAGTGGTTGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

53.086

96.659

0.513
  pilC Pseudomonas stutzeri DSM 10701

51.889

94.749

0.492
  pilC Acinetobacter baylyi ADP1

50.369

97.136

0.489
  pilC Acinetobacter baumannii D1279779

48.894

97.136

0.475
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilG Neisseria gonorrhoeae MS11

42.714

94.988

0.406
  pilC Vibrio cholerae strain A1552

40.099

96.42

0.387
  pilC Vibrio campbellii strain DS40M4

39.043

94.749

0.37
  pilC Thermus thermophilus HB27

37.376

96.42

0.36

Multiple sequence alignment