Detailed information NTG1112298

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: LOK40_RS15510
• Genome accession: NZ_HG992336
• Coordinates: 3640152..3641546 (+)
• Length: 464 a.a.
• NCBI ID: WP_127159848.1
• Uniprot ID: -
• Organism: Xanthomonas arboricola strain 1311a isolate 1311a
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3635152..3646546

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LOK40_RS15495 (XA1311A_30290)	sucD	3636045..3636920 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
LOK40_RS15500 (XA1311A_30300)	sucC	3636945..3638114 (-)	1170	WP_039519379.1	ADP-forming succinate--CoA ligase subunit beta	-
LOK40_RS15505 (XA1311A_30310)	-	3638346..3639959 (+)	1614	WP_016901263.1	HAMP domain-containing sensor histidine kinase	-
LOK40_RS15510 (XA1311A_30320)	pilR	3640152..3641546 (+)	1395	WP_127159848.1	sigma-54 dependent transcriptional regulator	Regulator
LOK40_RS15515 (XA1311A_30330)	pilB	3641788..3643524 (-)	1737	WP_127159907.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LOK40_RS15520 (XA1311A_30340)	-	3643757..3644206 (-)	450	WP_127159847.1	pilin	-
LOK40_RS15525 (XA1311A_30350)	pilC	3644582..3645841 (+)	1260	WP_127159846.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50130.52 Da
• Isoelectric Point: 6.5112

>NTDB_id=1112298 LOK40_RS15510 WP_127159848.1 3640152..3641546(+) (pilR) [Xanthomonas arboricola strain 1311a isolate 1311a]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSGAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=1112298 LOK40_RS15510 WP_127159848.1 3640152..3641546(+) (pilR) [Xanthomonas arboricola strain 1311a isolate 1311a]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCTGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGTGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAATAACCGCGACCGCCCCGCCCCGCCACCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCGGCGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCGCCAGTCTACATCGTCGGCGAATCGGGCGTAGGCAAGGAGCTGGTCGCCCGCACCATCCACGAACAGGGCGC
CCGCGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAACTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAGGGCAGCTTCACCGGCGCGCATGCCGACAAGCCAGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
CTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAGAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TTCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCACATAGCCACGGCCGGCCGATTCCGCTGCTCACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGTTGGAAAACATACTAGAACGCGCCCTGGCCTTGGCCGAAG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTCGCCGCCACCCCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCGGTGGTGGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAGGCACTGGAGGAGAATCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTATAAATTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.067	99.784	0.629
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491