Detailed information NTG1111725

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: HMPREF9425_RS00770
• Genome accession: NZ_GL831112
• Coordinates: 144336..144728 (+)
• Length: 130 a.a.
• NCBI ID: WP_003095913.1
• Uniprot ID: -
• Organism: Streptococcus vestibularis ATCC 49124
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 139336..149728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HMPREF9425_RS00735 (HMPREF9425_0151)	proC	139539..140309 (-)	771	WP_003095901.1	pyrroline-5-carboxylate reductase	-
HMPREF9425_RS00740 (HMPREF9425_0152)	pepA	140325..141392 (-)	1068	WP_003095903.1	glutamyl aminopeptidase	-
HMPREF9425_RS00745 (HMPREF9425_0153)	-	141492..141776 (+)	285	WP_037621617.1	DUF4651 domain-containing protein	-
HMPREF9425_RS00750 (HMPREF9425_0154)	-	141773..142087 (+)	315	WP_003095907.1	thioredoxin family protein	-
HMPREF9425_RS00755 (HMPREF9425_0155)	ytpR	142097..142720 (+)	624	WP_003092102.1	YtpR family tRNA-binding protein	-
HMPREF9425_RS00760 (HMPREF9425_0156)	-	142858..143889 (+)	1032	WP_003095909.1	YeeE/YedE family protein	-
HMPREF9425_RS00765 (HMPREF9425_0157)	-	143904..144131 (+)	228	WP_003095911.1	sulfurtransferase TusA family protein	-
HMPREF9425_RS00770 (HMPREF9425_0158)	ssbA	144336..144728 (+)	393	WP_003095913.1	single-stranded DNA-binding protein	Machinery gene
HMPREF9425_RS00775 (HMPREF9425_0159)	tadA	145425..145943 (+)	519	WP_003095914.1	tRNA adenosine(34) deaminase TadA	-
HMPREF9425_RS00780 (HMPREF9425_0160)	-	146024..146287 (-)	264	WP_003091993.1	hypothetical protein	-
HMPREF9425_RS00785 (HMPREF9425_0161)	-	146340..146477 (-)	138	WP_003092077.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
HMPREF9425_RS00790 (HMPREF9425_0162)	-	146525..146689 (-)	165	WP_003091944.1	class IIb bacteriocin, lactobin A/cerein 7B family	-
HMPREF9425_RS00795 (HMPREF9425_0163)	-	147045..147884 (+)	840	WP_003095919.1	methyltransferase domain-containing protein	-
HMPREF9425_RS00800 (HMPREF9425_0164)	-	147998..148750 (+)	753	WP_003095921.1	HAD family hydrolase	-
HMPREF9425_RS00805 (HMPREF9425_0165)	dapD	148836..149534 (+)	699	WP_037621250.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase	-

Sequence

Protein

• Length: 130 a.a.
• Molecular weight: 14783.72 Da
• Isoelectric Point: 5.9275

>NTDB_id=1111725 HMPREF9425_RS00770 WP_003095913.1 144336..144728(+) (ssbA) [Streptococcus vestibularis ATCC 49124]
MYNKVILIGRLTATPEIVKTASDRSFTRVTVAVNRRYKTQNGEREADFITVVVWGRLAETLASYVSKGSLISLDGEIRTR
KYDKDGQTHYVTEVLCSSFQLLESRAQRAVRENNPDNDLADLILEEELPF

Nucleotide

• Length: 393 bp

>NTDB_id=1111725 HMPREF9425_RS00770 WP_003095913.1 144336..144728(+) (ssbA) [Streptococcus vestibularis ATCC 49124]
ATGTATAACAAAGTAATTTTAATTGGACGTTTGACAGCAACACCTGAAATAGTTAAGACTGCTAGCGACAGGTCTTTTAC
ACGTGTCACAGTTGCGGTTAATCGTCGCTATAAGACGCAAAATGGTGAGCGTGAGGCTGACTTTATTACAGTAGTGGTTT
GGGGCCGTTTAGCTGAGACCTTGGCATCTTATGTTAGCAAGGGAAGTTTAATTTCTCTTGATGGTGAGATTCGCACTCGT
AAGTATGATAAGGATGGTCAAACTCATTACGTTACTGAAGTGCTTTGTTCCTCTTTCCAACTTCTGGAGAGTCGTGCTCA
GCGTGCTGTTAGGGAAAATAATCCTGACAATGACTTGGCTGACCTGATTTTAGAAGAAGAACTTCCCTTTTAG

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (3-102)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Streptococcus mutans UA159	78.626	100	0.792
ssbB	Streptococcus sobrinus strain NIDR 6715-7	74.809	100	0.754
ssbB/cilA	Streptococcus pneumoniae TIGR4	74.046	100	0.746
ssbB/cilA	Streptococcus mitis SK321	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae R6	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae Rx1	73.282	100	0.738
ssbB/cilA	Streptococcus pneumoniae D39	73.282	100	0.738
ssbB/cilA	Streptococcus mitis NCTC 12261	71.756	100	0.723
ssbB	Lactococcus lactis subsp. cremoris KW2	62.5	86.154	0.538
ssbA	Bacillus subtilis subsp. subtilis str. 168	47.17	81.538	0.385
ssb	Latilactobacillus sakei subsp. sakei 23K	46.226	81.538	0.377