Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   HMPREF9319_RS00480 Genome accession   NZ_GL397128
Coordinates   80965..81360 (+) Length   131 a.a.
NCBI ID   WP_003062939.1    Uniprot ID   E0PB66
Organism   Streptococcus equinus ATCC 700338     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 75965..86360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9319_RS00445 (HMPREF9319_0082) - 76051..76689 (+) 639 WP_003062931.1 CPBP family intramembrane glutamic endopeptidase -
  HMPREF9319_RS00450 (HMPREF9319_0083) proC 76733..77503 (-) 771 WP_003062932.1 pyrroline-5-carboxylate reductase -
  HMPREF9319_RS00455 (HMPREF9319_0084) pepA 77564..78631 (-) 1068 WP_003062933.1 glutamyl aminopeptidase -
  HMPREF9319_RS00460 (HMPREF9319_0085) - 78674..79183 (-) 510 WP_003062934.1 GNAT family N-acetyltransferase -
  HMPREF9319_RS10610 (HMPREF9319_0086) - 79632..79925 (+) 294 WP_041974068.1 DUF4651 domain-containing protein -
  HMPREF9319_RS00470 (HMPREF9319_0087) - 79918..80235 (+) 318 WP_003062936.1 thioredoxin family protein -
  HMPREF9319_RS00475 (HMPREF9319_0088) ytpR 80244..80870 (+) 627 WP_003062937.1 YtpR family tRNA-binding protein -
  HMPREF9319_RS00480 (HMPREF9319_0089) ssbA 80965..81360 (+) 396 WP_003062939.1 single-stranded DNA-binding protein Machinery gene
  HMPREF9319_RS00485 (HMPREF9319_0090) - 81479..82285 (+) 807 WP_003062940.1 Cof-type HAD-IIB family hydrolase -
  HMPREF9319_RS00490 (HMPREF9319_0091) - 82439..83404 (+) 966 WP_013851405.1 sugar ABC transporter substrate-binding protein -
  HMPREF9319_RS00495 (HMPREF9319_0092) - 83395..84720 (+) 1326 WP_370695861.1 sensor histidine kinase -
  HMPREF9319_RS00500 (HMPREF9319_0093) - 84717..85400 (+) 684 WP_003062946.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14873.86 Da        Isoelectric Point: 5.7916

>NTDB_id=1111667 HMPREF9319_RS00480 WP_003062939.1 80965..81360(+) (ssbA) [Streptococcus equinus ATCC 700338]
MYNKVIMIGRLTAQPELVTTSNEKSVTRVTLAVNRRFKSQNGEREADFISIVVWGRLAETLVSYAGKGSLISIDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAIRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1111667 HMPREF9319_RS00480 WP_003062939.1 80965..81360(+) (ssbA) [Streptococcus equinus ATCC 700338]
ATGTACAATAAAGTTATTATGATTGGTCGTTTGACGGCGCAGCCTGAGCTTGTGACGACGTCAAATGAGAAATCTGTTAC
ACGTGTAACATTAGCAGTTAACCGCCGTTTTAAATCGCAAAATGGTGAGCGTGAGGCTGATTTTATTTCAATTGTGGTTT
GGGGACGTTTAGCAGAAACTCTTGTTTCTTATGCTGGAAAAGGAAGTCTGATTTCGATTGATGGCGAGCTTCGCACACGC
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGCTATACGAGAAAATAATGTGGCAAACGACCTCGCTGATTTAGTTTTGGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E0PB66

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae TIGR4

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus mitis NCTC 12261

75.573

100

0.756
  ssbB/cilA Streptococcus mitis SK321

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

63.158

87.023

0.55
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.943

80.916

0.412
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405

Multiple sequence alignment