Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | ACODT9_RS03305 | Genome accession | NZ_CP184747 |
| Coordinates | 744161..745381 (+) | Length | 406 a.a. |
| NCBI ID | WP_014147180.1 | Uniprot ID | G4T0U4 |
| Organism | Methylotuvimicrobium alcaliphilum strain 20ZK | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 739161..750381
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACODT9_RS03295 (ACODT9_03295) | - | 739514..742324 (+) | 2811 | WP_014147178.1 | valine--tRNA ligase | - |
| ACODT9_RS03300 (ACODT9_03300) | pilB | 742440..744158 (+) | 1719 | WP_014147179.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| ACODT9_RS03305 (ACODT9_03305) | pilC | 744161..745381 (+) | 1221 | WP_014147180.1 | type II secretion system F family protein | Machinery gene |
| ACODT9_RS03310 (ACODT9_03310) | pilD | 745767..746669 (+) | 903 | WP_014147181.1 | prepilin peptidase | Machinery gene |
| ACODT9_RS03315 (ACODT9_03315) | coaE | 746674..747279 (+) | 606 | WP_014147182.1 | dephospho-CoA kinase | - |
| ACODT9_RS03320 (ACODT9_03320) | zapD | 747283..748053 (+) | 771 | WP_014147183.1 | cell division protein ZapD | - |
| ACODT9_RS03325 (ACODT9_03325) | yacG | 748053..748259 (+) | 207 | WP_014147184.1 | DNA gyrase inhibitor YacG | - |
| ACODT9_RS03330 (ACODT9_03330) | - | 748887..749240 (-) | 354 | WP_223842343.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44944.00 Da Isoelectric Point: 6.8775
>NTDB_id=1111109 ACODT9_RS03305 WP_014147180.1 744161..745381(+) (pilC) [Methylotuvimicrobium alcaliphilum strain 20ZK]
MSEQIEQIDFIWDGKDKSGKRTKGEIAAKSETIARSELRKMGVRVISVKKKPKPLFGARVKAITPGDIAIFSRQLATMLE
AGVPLVQSFDIIGRGHENPSMQKMLLDIKTDIEGGDTLAEALKRRPVYFDELFCNLVESGEQAGVLETLLDKIATYKEKT
ESLKKKIKKALTYPIAVLVVAFVVTAILLIFVVPVFEELFQSFGADLPAFTKMVINLSEWMQEWWWIIVLSIVAIVYVFG
YFHKRSRPFNHFLDRTLLKIPVVGLILNKSAIARFARTLSTMSAAGVPLVEALESVAGACGNIIYADAVLKMREDVATGQ
RLQFAMQQTVLFPHMVTQMVAIGEESGSIDTMLSKVADFYEEEVDNLVDNLSSLMEPLIMSVLGVLVGGLIVAMYLPIFK
MGAAVG
MSEQIEQIDFIWDGKDKSGKRTKGEIAAKSETIARSELRKMGVRVISVKKKPKPLFGARVKAITPGDIAIFSRQLATMLE
AGVPLVQSFDIIGRGHENPSMQKMLLDIKTDIEGGDTLAEALKRRPVYFDELFCNLVESGEQAGVLETLLDKIATYKEKT
ESLKKKIKKALTYPIAVLVVAFVVTAILLIFVVPVFEELFQSFGADLPAFTKMVINLSEWMQEWWWIIVLSIVAIVYVFG
YFHKRSRPFNHFLDRTLLKIPVVGLILNKSAIARFARTLSTMSAAGVPLVEALESVAGACGNIIYADAVLKMREDVATGQ
RLQFAMQQTVLFPHMVTQMVAIGEESGSIDTMLSKVADFYEEEVDNLVDNLSSLMEPLIMSVLGVLVGGLIVAMYLPIFK
MGAAVG
Nucleotide
Download Length: 1221 bp
>NTDB_id=1111109 ACODT9_RS03305 WP_014147180.1 744161..745381(+) (pilC) [Methylotuvimicrobium alcaliphilum strain 20ZK]
ATGTCTGAACAAATCGAACAAATTGATTTCATCTGGGATGGTAAAGACAAAAGCGGGAAACGCACCAAGGGGGAAATCGC
CGCGAAATCCGAAACGATTGCTCGGAGCGAATTGCGCAAAATGGGCGTGCGCGTCATTAGTGTGAAGAAAAAACCCAAAC
CCTTGTTCGGCGCGCGTGTCAAAGCCATTACGCCAGGCGATATCGCTATTTTTAGCCGTCAACTCGCGACGATGCTCGAA
GCCGGCGTGCCGTTGGTGCAATCGTTCGATATCATCGGGAGAGGTCATGAAAACCCGAGCATGCAAAAAATGCTGCTTGA
TATCAAGACGGATATCGAAGGCGGCGATACCTTGGCCGAAGCGCTGAAAAGAAGACCGGTCTATTTCGATGAGCTTTTTT
GTAATTTGGTCGAGTCGGGCGAACAGGCCGGGGTGCTTGAGACATTGCTCGATAAGATAGCGACTTATAAAGAAAAAACC
GAATCGCTCAAGAAAAAAATTAAAAAAGCGTTGACCTACCCGATTGCGGTGCTGGTCGTCGCGTTTGTCGTCACCGCCAT
TTTGCTGATTTTCGTCGTGCCGGTGTTCGAAGAGTTGTTTCAGAGCTTCGGAGCCGATCTTCCCGCTTTCACGAAGATGG
TTATCAACCTTTCCGAATGGATGCAAGAGTGGTGGTGGATCATCGTCCTCAGTATTGTGGCAATCGTTTATGTTTTTGGT
TATTTCCATAAACGCTCAAGACCGTTCAATCATTTTCTGGACAGAACCTTATTGAAAATACCGGTTGTCGGATTGATCTT
GAATAAATCAGCCATCGCACGCTTCGCCAGAACGTTGTCGACGATGTCCGCCGCCGGCGTTCCGTTAGTTGAAGCGCTGG
AGTCTGTTGCGGGTGCTTGCGGAAACATTATTTATGCCGATGCTGTGTTAAAGATGCGCGAAGATGTCGCGACCGGCCAA
CGCTTGCAATTTGCCATGCAGCAAACCGTTTTGTTCCCCCACATGGTCACCCAAATGGTCGCAATCGGTGAGGAATCCGG
TTCGATAGACACGATGCTGAGTAAAGTTGCCGATTTTTACGAAGAAGAGGTCGATAATTTGGTAGACAATCTCAGCAGCT
TGATGGAGCCGTTGATCATGTCGGTGTTGGGTGTCTTGGTTGGCGGCTTGATCGTTGCGATGTACCTGCCGATCTTTAAA
ATGGGTGCGGCAGTGGGTTAG
ATGTCTGAACAAATCGAACAAATTGATTTCATCTGGGATGGTAAAGACAAAAGCGGGAAACGCACCAAGGGGGAAATCGC
CGCGAAATCCGAAACGATTGCTCGGAGCGAATTGCGCAAAATGGGCGTGCGCGTCATTAGTGTGAAGAAAAAACCCAAAC
CCTTGTTCGGCGCGCGTGTCAAAGCCATTACGCCAGGCGATATCGCTATTTTTAGCCGTCAACTCGCGACGATGCTCGAA
GCCGGCGTGCCGTTGGTGCAATCGTTCGATATCATCGGGAGAGGTCATGAAAACCCGAGCATGCAAAAAATGCTGCTTGA
TATCAAGACGGATATCGAAGGCGGCGATACCTTGGCCGAAGCGCTGAAAAGAAGACCGGTCTATTTCGATGAGCTTTTTT
GTAATTTGGTCGAGTCGGGCGAACAGGCCGGGGTGCTTGAGACATTGCTCGATAAGATAGCGACTTATAAAGAAAAAACC
GAATCGCTCAAGAAAAAAATTAAAAAAGCGTTGACCTACCCGATTGCGGTGCTGGTCGTCGCGTTTGTCGTCACCGCCAT
TTTGCTGATTTTCGTCGTGCCGGTGTTCGAAGAGTTGTTTCAGAGCTTCGGAGCCGATCTTCCCGCTTTCACGAAGATGG
TTATCAACCTTTCCGAATGGATGCAAGAGTGGTGGTGGATCATCGTCCTCAGTATTGTGGCAATCGTTTATGTTTTTGGT
TATTTCCATAAACGCTCAAGACCGTTCAATCATTTTCTGGACAGAACCTTATTGAAAATACCGGTTGTCGGATTGATCTT
GAATAAATCAGCCATCGCACGCTTCGCCAGAACGTTGTCGACGATGTCCGCCGCCGGCGTTCCGTTAGTTGAAGCGCTGG
AGTCTGTTGCGGGTGCTTGCGGAAACATTATTTATGCCGATGCTGTGTTAAAGATGCGCGAAGATGTCGCGACCGGCCAA
CGCTTGCAATTTGCCATGCAGCAAACCGTTTTGTTCCCCCACATGGTCACCCAAATGGTCGCAATCGGTGAGGAATCCGG
TTCGATAGACACGATGCTGAGTAAAGTTGCCGATTTTTACGAAGAAGAGGTCGATAATTTGGTAGACAATCTCAGCAGCT
TGATGGAGCCGTTGATCATGTCGGTGTTGGGTGTCTTGGTTGGCGGCTTGATCGTTGCGATGTACCTGCCGATCTTTAAA
ATGGGTGCGGCAGTGGGTTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Legionella pneumophila strain ERS1305867 |
61.307 |
98.03 |
0.601 |
| pilC | Pseudomonas stutzeri DSM 10701 |
58.586 |
97.537 |
0.571 |
| pilC | Acinetobacter baumannii D1279779 |
58.186 |
97.783 |
0.569 |
| pilC | Acinetobacter baylyi ADP1 |
56.171 |
97.783 |
0.549 |
| pilG | Neisseria meningitidis 44/76-A |
45.75 |
98.522 |
0.451 |
| pilG | Neisseria gonorrhoeae MS11 |
45.5 |
98.522 |
0.448 |
| pilC | Vibrio campbellii strain DS40M4 |
41.457 |
98.03 |
0.406 |
| pilC | Vibrio cholerae strain A1552 |
40.955 |
98.03 |
0.401 |
| pilC | Thermus thermophilus HB27 |
38.191 |
98.03 |
0.374 |