Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   ACNR93_RS00760 Genome accession   NZ_CP184736
Coordinates   112556..112951 (+) Length   131 a.a.
NCBI ID   WP_420543669.1    Uniprot ID   -
Organism   Streptococcus equinus strain NM-2-29     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 107556..117951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACNR93_RS00720 (ACNR93_00720) - 107807..108004 (+) 198 WP_021141442.1 helix-turn-helix transcriptional regulator -
  ACNR93_RS00725 (ACNR93_00725) - 108060..108512 (+) 453 WP_074483978.1 ABC transporter permease -
  ACNR93_RS00730 (ACNR93_00730) - 108524..109159 (+) 636 WP_420543668.1 CPBP family intramembrane glutamic endopeptidase -
  ACNR93_RS00735 (ACNR93_00735) proC 109211..109981 (-) 771 WP_045798324.1 pyrroline-5-carboxylate reductase -
  ACNR93_RS00740 (ACNR93_00740) pepA 110043..111110 (-) 1068 WP_024344502.1 glutamyl aminopeptidase -
  ACNR93_RS00745 (ACNR93_00745) - 111229..111522 (+) 294 WP_027968030.1 DUF4651 domain-containing protein -
  ACNR93_RS00750 (ACNR93_00750) - 111515..111832 (+) 318 WP_021141448.1 thioredoxin family protein -
  ACNR93_RS00755 (ACNR93_00755) ytpR 111841..112467 (+) 627 WP_027968031.1 YtpR family tRNA-binding protein -
  ACNR93_RS00760 (ACNR93_00760) ssbA 112556..112951 (+) 396 WP_420543669.1 single-stranded DNA-binding protein Machinery gene
  ACNR93_RS00765 (ACNR93_00765) - 113131..113931 (+) 801 WP_420543670.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14821.86 Da        Isoelectric Point: 5.2676

>NTDB_id=1110927 ACNR93_RS00760 WP_420543669.1 112556..112951(+) (ssbA) [Streptococcus equinus strain NM-2-29]
MYNKVIMIGRLTAQPELVTTPTEKSVTRVTLAVNRRFKSQNGEREADFISLVVWGRLAETLVSYAGKGSLISVDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQCAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=1110927 ACNR93_RS00760 WP_420543669.1 112556..112951(+) (ssbA) [Streptococcus equinus strain NM-2-29]
ATGTACAATAAAGTTATTATGATTGGGCGTTTGACAGCGCAGCCTGAATTGGTGACAACGCCAACCGAAAAATCTGTTAC
ACGTGTAACACTAGCCGTTAACCGTCGTTTTAAATCACAAAATGGTGAGCGTGAAGCGGATTTTATTTCGCTTGTGGTTT
GGGGGCGTTTAGCAGAAACGCTCGTTTCTTATGCTGGAAAAGGGAGTTTGATTTCTGTTGATGGAGAGCTTCGTACGCGT
AAATACGAAAAGGATGGTCACACCAATTATGTGACAGAAGTGCTCTGCCATTCTTTCCAACTATTAGAAAGTCGTGCCCA
ATGTGCCATGCGAGAAAATAATGTGGCCAATGATTTGGCAGATTTAGTTCTGGAAGAGGAGGAATTGCCATTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

80.153

100

0.802
  ssbB/cilA Streptococcus pneumoniae R6

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae Rx1

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae D39

77.099

100

0.771
  ssbB/cilA Streptococcus pneumoniae TIGR4

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus mitis NCTC 12261

75.573

100

0.756
  ssbB/cilA Streptococcus mitis SK321

75.573

100

0.756
  ssbB Lactococcus lactis subsp. cremoris KW2

62.281

87.023

0.542
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.887

80.916

0.42
  ssb Latilactobacillus sakei subsp. sakei 23K

45.299

89.313

0.405

Multiple sequence alignment