Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACMCM8_RS03320 Genome accession   NZ_AP038333
Coordinates   759147..760355 (-) Length   402 a.a.
NCBI ID   WP_412725440.1    Uniprot ID   -
Organism   Alteromonas sp. D210916BOD_24     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 754147..765355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACMCM8_RS03290 (D210916BOD24_06500) mutT 754695..755084 (+) 390 WP_412725428.1 8-oxo-dGTP diphosphatase MutT -
  ACMCM8_RS03295 (D210916BOD24_06510) - 755215..756087 (-) 873 WP_412725430.1 aspartoacylase -
  ACMCM8_RS03300 (D210916BOD24_06520) yacG 756304..756531 (-) 228 WP_412725432.1 DNA gyrase inhibitor YacG -
  ACMCM8_RS03305 (D210916BOD24_06530) zapD 756576..757328 (-) 753 WP_412725434.1 cell division protein ZapD -
  ACMCM8_RS03310 (D210916BOD24_06540) coaE 757520..758137 (-) 618 WP_412725436.1 dephospho-CoA kinase -
  ACMCM8_RS03315 (D210916BOD24_06550) pilD 758172..759065 (-) 894 WP_412725438.1 prepilin peptidase Machinery gene
  ACMCM8_RS03320 (D210916BOD24_06560) pilC 759147..760355 (-) 1209 WP_412725440.1 type II secretion system F family protein Machinery gene
  ACMCM8_RS03325 (D210916BOD24_06570) - 760519..760941 (-) 423 WP_412725442.1 pilin -
  ACMCM8_RS03330 (D210916BOD24_06580) nadC 761328..762182 (-) 855 WP_412727604.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ACMCM8_RS03335 (D210916BOD24_06590) - 762202..762720 (-) 519 WP_412725444.1 TIGR02281 family clan AA aspartic protease -
  ACMCM8_RS03340 (D210916BOD24_06600) ampD 762889..763437 (+) 549 WP_412725446.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  ACMCM8_RS03345 (D210916BOD24_06610) ampE 763453..764322 (+) 870 WP_412725448.1 beta-lactamase regulator AmpE -

Sequence

Protein


Download         Length: 402 a.a.        Molecular weight: 43776.51 Da        Isoelectric Point: 9.7126

>NTDB_id=110995 ACMCM8_RS03320 WP_412725440.1 759147..760355(-) (pilC) [Alteromonas sp. D210916BOD_24]
MAKSAITFTWQGKDRHGQSRKGEISATSLAEAKNLLRRQGISANRVKKLAKPLFGGGQKITPADISVISRQIATMLGAGV
TLIQSLEMIAQGHGKPSMRKLLSEITDEVKSGNPLSSALRKHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEAL
KSKIKKAMFYPIAVLVVAFIVTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFIAIGLGGAGYMFMRTY
KRSQKLRDKVDRNLLKVPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNAVYREAILYIRKEVAGGMPMY
IAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAEVDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMGN
VV

Nucleotide


Download         Length: 1209 bp        

>NTDB_id=110995 ACMCM8_RS03320 WP_412725440.1 759147..760355(-) (pilC) [Alteromonas sp. D210916BOD_24]
ATGGCTAAATCGGCAATTACATTCACGTGGCAAGGTAAAGACAGACACGGTCAATCCCGCAAAGGTGAAATATCAGCCAC
TTCTTTGGCTGAAGCTAAAAATCTGTTACGGCGACAAGGTATTTCAGCCAATCGCGTTAAAAAATTGGCTAAGCCTTTAT
TCGGCGGTGGTCAGAAAATTACACCTGCTGACATCTCCGTCATTTCGCGCCAAATTGCCACTATGCTGGGCGCTGGGGTA
ACACTTATTCAATCATTAGAAATGATTGCGCAAGGCCATGGTAAACCCAGCATGCGAAAACTGCTGAGTGAAATAACAGA
CGAAGTAAAATCAGGTAACCCATTGTCTTCGGCGTTGCGCAAGCACCCGCTTTATTTCGACGATCTATATTGCGACTTGG
TTTATACCGGTGAACAATCGGGTGCCTTGGAAACCATTTACGACAGGATCGCCACCTACAAGGAAAAGGCGGAGGCGTTA
AAGTCTAAAATTAAAAAGGCCATGTTTTACCCGATTGCGGTACTTGTGGTAGCGTTCATTGTAACCACCATTCTTTTGAT
CTTTGTGGTACCCCAATTTGAGGAAATCTTCAGTAGTTTTGGTGCTGAACTTCCCGCCTTCACCCAATTTGTTTTAGCCA
TTTCCCGATTTGTACAAGACTACGGAATTTTTATAGCAATAGGATTGGGCGGCGCTGGATATATGTTTATGCGCACCTAC
AAGAGAAGCCAAAAGCTGCGTGACAAAGTAGACAGAAACTTACTAAAAGTACCGGTTATTGGAGAAATACTAAAAAAAGC
CAGTATTGCCCGATTTACCCGCACTCTGGCCACCACATTCGCAGCAGGGGTCCCCCTTATCGGCGCTTTGGAATCAGCTG
CGGGCGCATCAGGTAATGCCGTTTATCGCGAAGCCATTTTATATATACGCAAGGAAGTGGCGGGAGGCATGCCCATGTAT
ATCGCCATGCGAGCCACACAGGTATTCCCTGATATGGTGACGCAAATGATCGCTATTGGTGAAGAGTCTGGCGCAGTAGA
TGAAATGTTAAGTAAGATCGCAACCATTTACGAAGCCGAAGTTGACGACATGGTAGATGGTTTAACCAGCTTATTAGAGC
CCATGATAATGGCTGTACTTGGTGTGGTTATTGGGGGCTTAATTGTGGCCATGTACCTCCCTATATTCCAGATGGGTAAC
GTGGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(69-191)

Type II secretion system (T2SS), protein F (T2SSF)

(272-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

59.259

100

0.597
  pilC Acinetobacter baumannii D1279779

53.518

99.005

0.53
  pilC Legionella pneumophila strain ERS1305867

53.266

99.005

0.527
  pilC Acinetobacter baylyi ADP1

52.897

98.756

0.522
  pilG Neisseria meningitidis 44/76-A

46.929

100

0.475
  pilG Neisseria gonorrhoeae MS11

46.683

100

0.473
  pilC Vibrio cholerae strain A1552

45.844

98.756

0.453
  pilC Vibrio campbellii strain DS40M4

43.829

98.756

0.433
  pilC Thermus thermophilus HB27

36.75

99.502

0.366

Multiple sequence alignment