Detailed information NTG0110994

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACMCM8_RS03315
• Genome accession: NZ_AP038333
• Coordinates: 758172..759065 (-)
• Length: 297 a.a.
• NCBI ID: WP_412725438.1
• Uniprot ID: -
• Organism: Alteromonas sp. D210916BOD_24
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 753172..764065

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACMCM8_RS03290 (D210916BOD24_06500)	mutT	754695..755084 (+)	390	WP_412725428.1	8-oxo-dGTP diphosphatase MutT	-
ACMCM8_RS03295 (D210916BOD24_06510)	-	755215..756087 (-)	873	WP_412725430.1	aspartoacylase	-
ACMCM8_RS03300 (D210916BOD24_06520)	yacG	756304..756531 (-)	228	WP_412725432.1	DNA gyrase inhibitor YacG	-
ACMCM8_RS03305 (D210916BOD24_06530)	zapD	756576..757328 (-)	753	WP_412725434.1	cell division protein ZapD	-
ACMCM8_RS03310 (D210916BOD24_06540)	coaE	757520..758137 (-)	618	WP_412725436.1	dephospho-CoA kinase	-
ACMCM8_RS03315 (D210916BOD24_06550)	pilD	758172..759065 (-)	894	WP_412725438.1	prepilin peptidase	Machinery gene
ACMCM8_RS03320 (D210916BOD24_06560)	pilC	759147..760355 (-)	1209	WP_412725440.1	type II secretion system F family protein	Machinery gene
ACMCM8_RS03325 (D210916BOD24_06570)	-	760519..760941 (-)	423	WP_412725442.1	pilin	-
ACMCM8_RS03330 (D210916BOD24_06580)	nadC	761328..762182 (-)	855	WP_412727604.1	carboxylating nicotinate-nucleotide diphosphorylase	-
ACMCM8_RS03335 (D210916BOD24_06590)	-	762202..762720 (-)	519	WP_412725444.1	TIGR02281 family clan AA aspartic protease	-
ACMCM8_RS03340 (D210916BOD24_06600)	ampD	762889..763437 (+)	549	WP_412725446.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 32904.05 Da
• Isoelectric Point: 5.7655

>NTDB_id=110994 ACMCM8_RS03315 WP_412725438.1 758172..759065(-) (pilD) [Alteromonas sp. D210916BOD_24]
MEAIVTLSQIYPAFFYGAVFVVSLMVGSFLNVVIYRLPIMMERSWKNEFQHYFGDTENNNDIPTTNVQIEPFNLVKPDST
CPQCGHRIRAWENIPLLSYLVLKGKCASCEAPISIRYPFVELLTAIACTFAAFRFGVTPQALWAVLFTYVLIALLFIDLD
KMLLPDQLTLPLLWLGLLLSTQEVFIGTTDAIIGAAAGYLSLWSVYWLFKLATGKEGMGYGDFKLLGALGAFIGWQGLPV
VILLSSFVGAVAGLLIMFIQNKGKSLAIPFGPYLAVAGWITLLYKDSIILAYLNLVL

Nucleotide

• Length: 894 bp

>NTDB_id=110994 ACMCM8_RS03315 WP_412725438.1 758172..759065(-) (pilD) [Alteromonas sp. D210916BOD_24]
ATGGAAGCAATAGTAACGCTTAGTCAAATTTATCCCGCCTTTTTCTATGGTGCCGTGTTTGTAGTTAGCCTAATGGTAGG
TAGCTTTTTAAATGTTGTAATTTACAGGCTACCTATCATGATGGAGCGAAGCTGGAAAAACGAATTTCAACACTACTTTG
GCGACACTGAAAACAATAATGACATTCCCACAACGAATGTCCAAATTGAGCCGTTTAACCTGGTAAAGCCTGATAGTACG
TGCCCGCAATGTGGTCACCGCATACGCGCTTGGGAGAATATTCCCCTGCTAAGCTATCTTGTATTAAAGGGCAAATGTGC
TAGCTGTGAAGCGCCCATTTCAATACGTTACCCCTTTGTTGAATTACTGACCGCCATTGCATGCACTTTTGCGGCATTCC
GGTTTGGTGTGACGCCTCAAGCGCTTTGGGCGGTATTATTTACCTATGTATTGATTGCCTTGCTCTTTATTGACTTGGAC
AAAATGTTACTGCCTGACCAGCTTACCCTTCCCCTGCTATGGTTAGGGTTACTGCTAAGTACACAAGAAGTATTTATTGG
TACAACGGATGCCATTATTGGTGCTGCAGCGGGCTATTTAAGCCTGTGGTCGGTGTATTGGTTGTTTAAATTAGCCACTG
GCAAAGAAGGTATGGGGTACGGCGACTTCAAACTACTAGGCGCGCTTGGTGCGTTTATCGGGTGGCAAGGGCTCCCCGTT
GTCATATTGTTGTCGTCATTTGTGGGGGCAGTCGCAGGGCTTCTTATCATGTTTATCCAAAACAAAGGTAAATCACTGGC
CATTCCTTTTGGCCCCTACCTAGCTGTGGCCGGGTGGATAACCTTGTTATACAAAGACAGTATTATCTTGGCGTACTTAA
ATTTAGTACTATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-135)

• Type IV leader peptidase family (Peptidase_A24) (146-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.052	96.633	0.532
pilD	Vibrio campbellii strain DS40M4	53.448	97.643	0.522
pilD	Acinetobacter nosocomialis M2	50	94.276	0.471
pilD	Acinetobacter baumannii D1279779	49.821	93.939	0.468
pilD	Neisseria gonorrhoeae MS11	48.507	90.236	0.438