Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   ACN6MT_RS05580 Genome accession   NZ_CP183883
Coordinates   1165917..1166306 (+) Length   129 a.a.
NCBI ID   WP_419955044.1    Uniprot ID   -
Organism   Neobacillus niacini strain BE6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1160917..1171306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACN6MT_RS05545 (ACN6MT_05545) - 1160997..1161302 (-) 306 WP_419955042.1 MGMT family protein -
  ACN6MT_RS05550 (ACN6MT_05550) spoIIID 1161832..1162104 (+) 273 WP_007086083.1 sporulation transcriptional regulator SpoIIID -
  ACN6MT_RS05555 (ACN6MT_05555) - 1162639..1163640 (+) 1002 WP_063254779.1 rod shape-determining protein -
  ACN6MT_RS05560 (ACN6MT_05560) - 1163892..1164206 (+) 315 WP_063254780.1 DNA-directed RNA polymerase subunit beta -
  ACN6MT_RS05565 (ACN6MT_05565) fabZ 1164291..1164716 (+) 426 WP_063254781.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ACN6MT_RS05570 (ACN6MT_05570) - 1164827..1165186 (+) 360 WP_419955043.1 hypothetical protein -
  ACN6MT_RS05575 (ACN6MT_05575) - 1165223..1165654 (-) 432 WP_063254783.1 YwpF family protein -
  ACN6MT_RS05580 (ACN6MT_05580) ssbB 1165917..1166306 (+) 390 WP_419955044.1 single-stranded DNA-binding protein Machinery gene
  ACN6MT_RS05585 (ACN6MT_05585) - 1166303..1166578 (+) 276 WP_419955045.1 hypothetical protein -
  ACN6MT_RS05590 (ACN6MT_05590) - 1166844..1167254 (-) 411 WP_419955046.1 helix-turn-helix domain-containing protein -
  ACN6MT_RS05595 (ACN6MT_05595) - 1167474..1167866 (+) 393 WP_419955047.1 hypothetical protein -
  ACN6MT_RS05600 (ACN6MT_05600) - 1168317..1169393 (+) 1077 WP_419955048.1 3D domain-containing protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14524.52 Da        Isoelectric Point: 9.5167

>NTDB_id=1106701 ACN6MT_RS05580 WP_419955044.1 1165917..1166306(+) (ssbB) [Neobacillus niacini strain BE6]
MINQVTLVGRLTRDPELRRTSDGLPVTTVTLAVSRQFRNQQGEIEADFVQCTIWKKAAENTVQYCRKGSVVGVTGRLQTR
HYDNKEGKRVYVTEVVAESIQFLGAKPNYTNAESPPPVRVTVTKEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=1106701 ACN6MT_RS05580 WP_419955044.1 1165917..1166306(+) (ssbB) [Neobacillus niacini strain BE6]
ATGATCAATCAAGTCACGCTTGTGGGAAGACTTACGCGGGATCCGGAATTAAGAAGAACAAGTGATGGGCTGCCTGTCAC
GACTGTGACTCTGGCGGTTAGCCGCCAATTCCGAAACCAGCAGGGGGAAATTGAAGCAGACTTTGTCCAGTGCACCATTT
GGAAAAAGGCAGCTGAGAATACTGTCCAATATTGTCGAAAGGGTTCTGTTGTCGGTGTTACAGGCAGGCTTCAAACCCGT
CATTATGATAATAAAGAAGGGAAGCGTGTGTATGTAACAGAAGTGGTGGCCGAATCCATCCAATTCTTGGGGGCGAAGCC
AAACTATACAAACGCTGAATCGCCACCGCCAGTTAGGGTGACGGTTACGAAGGAGGAGCTTCCGTTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.551

82.946

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

82.171

0.496
  ssb Latilactobacillus sakei subsp. sakei 23K

59.223

79.845

0.473
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.939

100

0.45
  ssbA Streptococcus mutans UA159

40.152

100

0.411
  ssbB/cilA Streptococcus pneumoniae TIGR4

39.394

100

0.403
  ssbB/cilA Streptococcus mitis NCTC 12261

39.394

100

0.403
  ssbB/cilA Streptococcus pneumoniae Rx1

38.636

100

0.395
  ssbB/cilA Streptococcus pneumoniae D39

38.636

100

0.395
  ssbB/cilA Streptococcus pneumoniae R6

38.636

100

0.395
  ssbB/cilA Streptococcus mitis SK321

38.636

100

0.395

Multiple sequence alignment