Detailed information NTG0110638

Bioinformatically predicted

Overview

• Name: ssb
• Type: Machinery gene
• Locus tag: ACKTTW_RS14020
• Genome accession: NZ_AP031606
• Coordinates: 2851382..2851819 (-)
• Length: 145 a.a.
• NCBI ID: WP_011098432.1
• Uniprot ID: A0A4Q0VB51
• Organism: Clostridium tetani strain KHSU-092500-153
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2846382..2856819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACKTTW_RS13995 (K092500153_26900)	rplI	2847141..2847584 (-)	444	WP_011098436.1	50S ribosomal protein L9	-
ACKTTW_RS14000 (K092500153_26910)	-	2847581..2849575 (-)	1995	WP_035141195.1	DHH family phosphoesterase	-
ACKTTW_RS14005 (K092500153_26920)	-	2849588..2850577 (-)	990	WP_011098434.1	YybS family protein	-
ACKTTW_RS14010 (K092500153_26930)	-	2850591..2850908 (-)	318	WP_011098433.1	MazG-like family protein	-
ACKTTW_RS14015 (K092500153_26940)	rpsR	2851095..2851361 (-)	267	WP_023436916.1	30S ribosomal protein S18	-
ACKTTW_RS14020 (K092500153_26950)	ssb	2851382..2851819 (-)	438	WP_011098432.1	single-stranded DNA-binding protein	Machinery gene
ACKTTW_RS14025 (K092500153_26960)	rpsF	2851835..2852119 (-)	285	WP_023436913.1	30S ribosomal protein S6	-
ACKTTW_RS14030 (K092500153_26970)	-	2852217..2852417 (-)	201	WP_035141192.1	DUF951 domain-containing protein	-
ACKTTW_RS14035 (K092500153_26980)	-	2852410..2853294 (-)	885	WP_115606164.1	mechanosensitive ion channel family protein	-
ACKTTW_RS14040 (K092500153_26990)	ytvI	2853531..2854586 (+)	1056	WP_011098430.1	sporulation integral membrane protein YtvI	-
ACKTTW_RS14045 (K092500153_27000)	yyaC	2854642..2855217 (+)	576	WP_011098429.1	spore protease YyaC	-
ACKTTW_RS14050 (K092500153_27010)	-	2855239..2855736 (-)	498	WP_011098428.1	DUF4446 family protein	-
ACKTTW_RS14055 (K092500153_27020)	-	2855776..2856633 (-)	858	WP_115606166.1	ParB/RepB/Spo0J family partition protein	-

Sequence

Protein

• Length: 145 a.a.
• Molecular weight: 16180.96 Da
• Isoelectric Point: 4.6708

>NTDB_id=110638 ACKTTW_RS14020 WP_011098432.1 2851382..2851819(-) (ssb) [Clostridium tetani strain KHSU-092500-153]
MNRVVLIGRLTKDPELKFTPGTGTAVTTFVLAVDRRFSKDGKNEADFIPVVVWGKQAESTANYMSKGKLIGISGRIQTRS
YEAKDGTRRYVTEVVADEVKFLEWGNKQSSGSQGFNNFESDPLSYNNEDNYNDDITPVDEGEVPF

Nucleotide

• Length: 438 bp

>NTDB_id=110638 ACKTTW_RS14020 WP_011098432.1 2851382..2851819(-) (ssb) [Clostridium tetani strain KHSU-092500-153]
ATGAATCGTGTAGTCTTAATTGGAAGGCTTACAAAAGATCCTGAATTAAAGTTTACTCCGGGAACAGGAACAGCTGTAAC
TACTTTTGTTTTAGCTGTAGATAGAAGGTTTTCCAAAGATGGAAAAAATGAAGCTGACTTTATCCCTGTAGTAGTATGGG
GAAAACAGGCAGAATCAACAGCTAATTATATGAGTAAGGGTAAACTTATTGGAATTAGTGGAAGAATTCAAACTAGAAGT
TATGAGGCTAAAGATGGCACTAGAAGATATGTTACAGAAGTTGTAGCAGATGAGGTTAAATTCCTAGAATGGGGAAATAA
ACAGTCATCAGGTTCTCAAGGCTTTAATAATTTTGAATCAGATCCACTAAGTTATAATAATGAAGATAATTACAATGATG
ATATAACTCCTGTGGACGAAGGAGAAGTTCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (1-102)

3D structure

• AlphaFold DB: A0A4Q0VB51

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssb	Latilactobacillus sakei subsp. sakei 23K	42.262	100	0.49
ssbA	Bacillus subtilis subsp. subtilis str. 168	57.265	80.69	0.462
ssbB	Streptococcus sobrinus strain NIDR 6715-7	42.857	100	0.434
ssbA	Streptococcus mutans UA159	41.379	100	0.414
ssbB/cilA	Streptococcus mitis NCTC 12261	38.095	100	0.386
ssbB/cilA	Streptococcus pneumoniae TIGR4	37.415	100	0.379
ssbB	Bacillus subtilis subsp. subtilis str. 168	53.398	71.034	0.379
ssbB/cilA	Streptococcus pneumoniae Rx1	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae D39	36.735	100	0.372
ssbB/cilA	Streptococcus pneumoniae R6	36.735	100	0.372
ssbB/cilA	Streptococcus mitis SK321	36.735	100	0.372