Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   ACM595_RS03130 Genome accession   NZ_CP183796
Coordinates   652519..652830 (-) Length   103 a.a.
NCBI ID   WP_037538386.1    Uniprot ID   A0A380HKV5
Organism   Staphylococcus sp. LKG3-1     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 647519..657830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACM595_RS03105 (ACM595_03105) gcvPA 648059..649411 (-) 1353 WP_002483194.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  ACM595_RS03110 (ACM595_03110) gcvT 649429..650520 (-) 1092 WP_115338511.1 glycine cleavage system aminomethyltransferase GcvT -
  ACM595_RS03115 (ACM595_03115) - 650704..651177 (-) 474 WP_002483192.1 shikimate kinase -
  ACM595_RS03120 (ACM595_03120) comGF 651382..651825 (-) 444 WP_115338510.1 competence type IV pilus minor pilin ComGF -
  ACM595_RS03125 (ACM595_03125) comGD 652083..652538 (-) 456 WP_228160939.1 competence type IV pilus minor pilin ComGD -
  ACM595_RS03130 (ACM595_03130) comGC 652519..652830 (-) 312 WP_037538386.1 competence type IV pilus major pilin ComGC Machinery gene
  ACM595_RS03135 (ACM595_03135) comGB 652858..653922 (-) 1065 WP_181876259.1 competence type IV pilus assembly protein ComGB -
  ACM595_RS03140 (ACM595_03140) comGA 653894..654868 (-) 975 WP_115338507.1 competence type IV pilus ATPase ComGA Machinery gene
  ACM595_RS03145 (ACM595_03145) - 654956..655579 (-) 624 WP_115338506.1 MBL fold metallo-hydrolase -
  ACM595_RS03150 (ACM595_03150) - 655579..655905 (-) 327 WP_002483185.1 MTH1187 family thiamine-binding protein -
  ACM595_RS03155 (ACM595_03155) - 655905..656891 (-) 987 WP_115338505.1 glucokinase -
  ACM595_RS03160 (ACM595_03160) - 656895..657092 (-) 198 WP_037538382.1 YqgQ family protein -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 11386.52 Da        Isoelectric Point: 9.5858

>NTDB_id=1106109 ACM595_RS03130 WP_037538386.1 652519..652830(-) (comGC) [Staphylococcus sp. LKG3-1]
MKKLKINRKAFTLIEMLLVLLIISLLLILIIPNIAKQSSHLQNTGCEAQLKMIDSQIEAYALKFNKKPSSIEDLVTEGYI
KENQKSCKSGAAITINNGEAVAN

Nucleotide


Download         Length: 312 bp        

>NTDB_id=1106109 ACM595_RS03130 WP_037538386.1 652519..652830(-) (comGC) [Staphylococcus sp. LKG3-1]
ATGAAAAAACTAAAAATTAATAGAAAAGCTTTTACATTAATAGAAATGTTACTTGTATTATTGATAATTAGCTTATTATT
AATATTAATTATACCCAATATAGCTAAACAGTCGTCTCACTTGCAAAATACTGGATGTGAGGCACAACTTAAAATGATTG
ATAGCCAAATTGAAGCGTATGCTTTAAAGTTTAATAAAAAGCCATCGTCTATAGAAGACTTAGTTACAGAAGGATACATT
AAAGAAAATCAAAAGTCATGTAAATCTGGTGCAGCCATCACTATTAACAATGGTGAAGCTGTTGCAAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380HKV5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Staphylococcus aureus MW2

77.895

92.233

0.718
  comGC Staphylococcus aureus N315

77.895

92.233

0.718
  comYC Streptococcus gordonii str. Challis substr. CH1

43.81

100

0.447
  comGC/cglC Streptococcus mitis NCTC 12261

40.777

100

0.408
  comYC Streptococcus mutans UA159

48.837

83.495

0.408
  comYC Streptococcus mutans UA140

48.837

83.495

0.408
  comGC Bacillus subtilis subsp. subtilis str. 168

42.553

91.262

0.388
  comGC/cglC Streptococcus mitis SK321

46.429

81.553

0.379
  comYC Streptococcus suis isolate S10

45.882

82.524

0.379
  comGC/cglC Streptococcus pneumoniae R6

45.238

81.553

0.369
  comGC/cglC Streptococcus pneumoniae D39

45.238

81.553

0.369
  comGC/cglC Streptococcus pneumoniae Rx1

45.238

81.553

0.369
  comGC/cglC Streptococcus pneumoniae TIGR4

45.238

81.553

0.369

Multiple sequence alignment