Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ACAM27_RS08360 Genome accession   NZ_AP031605
Coordinates   1853314..1854534 (-) Length   406 a.a.
NCBI ID   WP_222179186.1    Uniprot ID   -
Organism   Marinobacter sp. RI1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1848314..1859534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM27_RS08340 (MspRI1_16640) tsaA 1849918..1850667 (-) 750 WP_153741130.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ACAM27_RS08345 (MspRI1_16650) - 1850676..1851665 (-) 990 WP_369612821.1 hypothetical protein -
  ACAM27_RS08350 (MspRI1_16660) coaE 1851754..1852371 (-) 618 WP_369612822.1 dephospho-CoA kinase -
  ACAM27_RS08355 (MspRI1_16670) pilD 1852372..1853247 (-) 876 WP_369612823.1 A24 family peptidase Machinery gene
  ACAM27_RS08360 (MspRI1_16680) pilC 1853314..1854534 (-) 1221 WP_222179186.1 type II secretion system F family protein Machinery gene
  ACAM27_RS08365 (MspRI1_16690) pilB 1854537..1856255 (-) 1719 WP_369612824.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAM27_RS08370 (MspRI1_16700) - 1856642..1857127 (+) 486 WP_369612825.1 pilin -
  ACAM27_RS08375 - 1857203..1859113 (+) 1911 WP_369612826.1 hypothetical protein -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44264.20 Da        Isoelectric Point: 9.5661

>NTDB_id=110608 ACAM27_RS08360 WP_222179186.1 1853314..1854534(-) (pilC) [Marinobacter sp. RI1]
MAEKAQKLESYIWEGKDRKGNKAKGELSGSNMALVKAQLRKQGIIPDKVKKKPKPLFGGSKKISPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMSIRNDISSGTGFASALRKHPKYFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
ELLKKKVKKAMTYPIAVIVVAIVVTAILLVKVVPQFETLFEGFGAELPVFTQFIINISEWMQKWWFIVLLGIVGTIFLFK
EAKRRSGKFSDVVDKYTLKLPVVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAVMNIKNDVSSGT
QLQASMRQQGVFPVMAVQLTAIGEESGNLDAMLAKVAEHYEGVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVVG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=110608 ACAM27_RS08360 WP_222179186.1 1853314..1854534(-) (pilC) [Marinobacter sp. RI1]
ATGGCAGAAAAAGCGCAGAAGCTGGAATCATACATCTGGGAAGGTAAAGACCGTAAAGGCAACAAAGCTAAAGGCGAACT
TTCCGGTTCGAACATGGCTTTAGTAAAAGCCCAATTGCGCAAGCAAGGGATTATTCCAGACAAAGTTAAAAAGAAGCCGA
AACCTCTCTTCGGCGGCAGCAAGAAAATATCTCCGTTTGATATTGCAATGCTGACGCGGCAGTTGGCAACGATGATGAAA
GCTGGGGTACCCCTGGTTCAAAGCTTCGACATTGTTGCTGACGGTCTAGAAAACAAGGGCTTGCAGGAGCTCGTTATGAG
CATCCGAAACGACATTTCATCCGGTACTGGATTCGCTTCTGCTCTCCGGAAACACCCAAAGTACTTCGATGACTTATACT
GCAACCTGGTCGATTCAGGCGAAAAGGCCGGCGCACTTGAGCAAATGCTTGACAGGATAGCCACTTACCTCGAAAAGACA
GAACTCCTTAAAAAGAAGGTCAAGAAGGCTATGACCTATCCTATAGCAGTAATAGTGGTTGCAATCGTTGTAACCGCTAT
TTTGCTGGTGAAGGTCGTGCCGCAATTCGAAACTTTGTTCGAAGGCTTTGGAGCGGAGTTGCCCGTGTTCACTCAATTTA
TAATCAATATTTCAGAGTGGATGCAAAAATGGTGGTTCATAGTTCTCCTTGGCATCGTCGGAACAATATTCCTTTTCAAG
GAGGCCAAGAGACGATCTGGTAAGTTCTCAGACGTGGTAGACAAATACACTCTGAAGCTACCTGTAGTTGGTGAAATACT
GGACAAGTCAGCCGTAGCAAAGTTCGGCCGAGTTTTATCAACAACTTTCGCAGCGGGCGTTCCTCTAGTGGATGCATTAG
ATTCCGTAGCGGGCGCCACCGGCAATGCCGTTTACCGCGATGCTGTCATGAACATCAAAAATGATGTTTCCAGTGGTACA
CAACTACAAGCATCCATGCGCCAGCAAGGCGTTTTCCCAGTTATGGCTGTCCAGCTTACAGCCATCGGCGAAGAGTCAGG
CAACTTGGACGCAATGCTCGCAAAAGTAGCTGAGCACTATGAAGGAGTTGTTGACGACATGGTCGACAACCTGACTGCGC
TAATGGAACCGATGATTATGGCCGTTCTGGGTGTTCTGGTTGGTGGTTTGATCATTGGTATGTACCTCCCAATCTTCCAG
ATGGGCCAGGTCGTCGGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.667

99.754

0.665
  pilC Acinetobacter baumannii D1279779

59.259

99.754

0.591
  pilC Acinetobacter baylyi ADP1

58.374

100

0.584
  pilC Legionella pneumophila strain ERS1305867

52.217

100

0.522
  pilG Neisseria gonorrhoeae MS11

42.857

100

0.429
  pilG Neisseria meningitidis 44/76-A

42.611

100

0.426
  pilC Vibrio campbellii strain DS40M4

39.066

100

0.392
  pilC Vibrio cholerae strain A1552

38.916

100

0.389
  pilC Thermus thermophilus HB27

36.79

99.754

0.367

Multiple sequence alignment