Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ACAM27_RS08355 Genome accession   NZ_AP031605
Coordinates   1852372..1853247 (-) Length   291 a.a.
NCBI ID   WP_369612823.1    Uniprot ID   -
Organism   Marinobacter sp. RI1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1847372..1858247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACAM27_RS08335 (MspRI1_16630) - 1847519..1849873 (-) 2355 WP_121207110.1 response regulator -
  ACAM27_RS08340 (MspRI1_16640) tsaA 1849918..1850667 (-) 750 WP_153741130.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  ACAM27_RS08345 (MspRI1_16650) - 1850676..1851665 (-) 990 WP_369612821.1 hypothetical protein -
  ACAM27_RS08350 (MspRI1_16660) coaE 1851754..1852371 (-) 618 WP_369612822.1 dephospho-CoA kinase -
  ACAM27_RS08355 (MspRI1_16670) pilD 1852372..1853247 (-) 876 WP_369612823.1 A24 family peptidase Machinery gene
  ACAM27_RS08360 (MspRI1_16680) pilC 1853314..1854534 (-) 1221 WP_222179186.1 type II secretion system F family protein Machinery gene
  ACAM27_RS08365 (MspRI1_16690) pilB 1854537..1856255 (-) 1719 WP_369612824.1 type IV-A pilus assembly ATPase PilB Machinery gene
  ACAM27_RS08370 (MspRI1_16700) - 1856642..1857127 (+) 486 WP_369612825.1 pilin -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32245.51 Da        Isoelectric Point: 7.1256

>NTDB_id=110607 ACAM27_RS08355 WP_369612823.1 1852372..1853247(-) (pilD) [Marinobacter sp. RI1]
MLPLETILSTPWLLYLVVIFVSLCVGSFLNVVILRLPKMMKQEWRCQCEEFLEVPEGDRKSEERITLSKPASTCPSCGHK
IRAWENIPVISWLMLGGKCSSCKTRISPRYPIIEALTAVFSVVTVYLLGPSETALWALLMVWALVALTMIDFDTQLLPDG
ITLPLMWLGLVLNYFGVLTDFGSAFWGAVAGYLSLWSVYWLFKLATGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSL
VGAIVGISLMVFRKHGREVPIPFGPYLAAAGLLSLWFGPEIQALWFGYLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=110607 ACAM27_RS08355 WP_369612823.1 1852372..1853247(-) (pilD) [Marinobacter sp. RI1]
ATGCTCCCCCTAGAAACCATCCTGTCCACCCCCTGGCTCCTCTATCTGGTCGTCATATTCGTCTCTCTCTGTGTCGGCAG
CTTTTTAAACGTTGTCATCTTGCGCCTGCCAAAAATGATGAAACAGGAATGGCGCTGCCAGTGCGAGGAGTTTCTGGAAG
TGCCGGAGGGCGACCGCAAGTCAGAAGAGCGGATAACTCTTTCAAAGCCGGCCTCCACCTGCCCGTCCTGCGGCCACAAA
ATTCGTGCCTGGGAGAACATTCCGGTCATCAGCTGGCTAATGCTTGGTGGCAAATGCTCTTCGTGCAAAACACGTATTTC
GCCGCGTTACCCCATCATTGAAGCACTGACTGCGGTTTTTTCCGTCGTAACGGTTTATCTGCTGGGGCCTTCTGAGACCG
CGCTCTGGGCACTACTGATGGTCTGGGCGCTGGTGGCGCTGACCATGATCGATTTCGACACACAACTCCTGCCAGACGGC
ATCACCCTGCCCCTGATGTGGCTTGGACTGGTGCTTAACTACTTTGGTGTGCTGACGGATTTTGGCAGCGCTTTCTGGGG
CGCTGTGGCAGGTTACCTCTCGCTCTGGAGCGTGTACTGGTTGTTCAAGCTGGCCACCGGCAAGGAAGGCATGGGGCACG
GGGACTTCAAGCTGTTAGCGGCGCTGGGGGCCTGGCTGGGCTGGCAACTGCTGCCTGCGGTGATTCTGCTCTCCTCTCTG
GTGGGCGCGATAGTGGGCATCAGTCTGATGGTATTCCGCAAACACGGACGTGAAGTGCCGATTCCTTTCGGCCCCTACCT
GGCCGCTGCAGGCTTACTCTCGTTGTGGTTCGGCCCTGAAATCCAGGCCTTGTGGTTCGGGTACCTAGGAGTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

55.109

94.158

0.519
  pilD Acinetobacter nosocomialis M2

54.38

94.158

0.512
  pilD Vibrio campbellii strain DS40M4

52.281

97.938

0.512
  pilD Vibrio cholerae strain A1552

51.93

97.938

0.509
  pilD Neisseria gonorrhoeae MS11

50.602

85.567

0.433

Multiple sequence alignment